Transcript: Human XM_005252428.4

PREDICTED: Homo sapiens disco interacting protein 2 homolog C (DIP2C), transcript variant X2, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
DIP2C (22982)
Length:
8122
CDS:
133..5001

Additional Resources:

NCBI RefSeq record:
XM_005252428.4
NBCI Gene record:
DIP2C (22982)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_005252428.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000435001 CCGCTTGGTGGGATCCATTTA pLKO_005 2965 CDS 100% 13.200 18.480 N DIP2C n/a
2 TRCN0000129743 CGTGGATAGTATCACAACAAA pLKO.1 5837 3UTR 100% 5.625 7.875 N DIP2C n/a
3 TRCN0000130718 GCGTGGATAGTATCACAACAA pLKO.1 5836 3UTR 100% 4.950 6.930 N DIP2C n/a
4 TRCN0000128522 CCACACATTAAAGATGCCAAT pLKO.1 1753 CDS 100% 4.050 5.670 N DIP2C n/a
5 TRCN0000129538 CCTGCCATAAAGGACTTCCAA pLKO.1 1631 CDS 100% 3.000 2.400 N DIP2C n/a
6 TRCN0000249876 TGAATGTTAGCAGCGTTATTT pLKO_005 7660 3UTR 100% 15.000 10.500 N Dip2c n/a
7 TRCN0000129768 CCAGCGGTTATTTCACTATTT pLKO.1 4475 CDS 100% 13.200 9.240 N DIP2C n/a
8 TRCN0000130866 GCTGTGTTTACCTGGACAAAT pLKO.1 4750 CDS 100% 13.200 9.240 N DIP2C n/a
9 TRCN0000416014 ATTGAGTACAAGACGTGTAAG pLKO_005 1789 CDS 100% 10.800 7.560 N DIP2C n/a
10 TRCN0000436383 TGGGATGCTAGCTGGCGTAAA pLKO_005 3732 CDS 100% 10.800 7.560 N DIP2C n/a
11 TRCN0000128102 CCGAGAAAGATGTGTTCTGTA pLKO.1 6619 3UTR 100% 4.950 3.465 N DIP2C n/a
12 TRCN0000129570 CGTGTGTGAAATCGAGGGATA pLKO.1 2066 CDS 100% 4.050 2.835 N DIP2C n/a
Download CSV

shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_005252428.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

Download CSV

All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 TRCN0000491860 TCACAAACTTACCCTGTAGTGGTG pLX_317 7.4% 95.9% 95.8% V5 (not translated due to prior stop codon) 158_325del;1416G>A;4089_4118del n/a
2 TRCN0000489852 GGCGACATTTAAACTATAATCTTA pLX_317 8.9% 95.8% 95.8% V5 (many diffs) n/a
Download CSV