Construct: ORF TRCN0000491281
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF021270.2_s317c1
- DNA Barcode:
- ACTAATCGTCTACCCTGAGCTCTT
- Epitope Tag:
- V5 (not translated due to prior stop codon)
- Notes:
- Has stop codon in insert
Originally Annotated References:
- Gene:
- ARL17A (51326)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000491281
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 51326 | ARL17A | ADP ribosylation factor lik... | NM_001288813.1 | 85.4% | 84.4% | 260_261insTAAAGATTA;264_265ins36 |
| 2 | human | 100996709 | LOC100996709 | ADP-ribosylation factor-lik... | XM_006725288.3 | 85.4% | 84.4% | 260_261insTAAAGATTA;264_265ins36 |
| 3 | human | 100506084 | ARL17B | ADP ribosylation factor lik... | NM_001330240.1 | 85.2% | 84.6% | (many diffs) |
| 4 | human | 51326 | ARL17A | ADP ribosylation factor lik... | NM_001330244.1 | 85.2% | 84.6% | (many diffs) |
| 5 | human | 100996709 | LOC100996709 | ADP-ribosylation factor-lik... | XM_011546391.2 | 85.2% | 84.6% | (many diffs) |
| 6 | human | 107984156 | LOC107984156 | ADP-ribosylation factor-lik... | XM_017030181.2 | 85.1% | 83.4% | 191G>C;260_261insTAAAGATTA;264_265ins36 |
| 7 | human | 107984156 | LOC107984156 | ADP-ribosylation factor-lik... | XM_011546379.2 | 84.9% | 83.6% | (many diffs) |
| 8 | human | 100506084 | ARL17B | ADP ribosylation factor lik... | NM_001103154.2 | 76.5% | 72.8% | (many diffs) |
| 9 | human | 51326 | ARL17A | ADP ribosylation factor lik... | NM_001288812.1 | 76.5% | 72.8% | (many diffs) |
| 10 | human | 100506084 | ARL17B | ADP ribosylation factor lik... | NM_001352769.1 | 76.5% | 72.8% | (many diffs) |
| 11 | human | 51326 | ARL17A | ADP ribosylation factor lik... | NM_016632.2 | 76.5% | 72.8% | (many diffs) |
| 12 | human | 51326 | ARL17A | ADP ribosylation factor lik... | XM_005257439.5 | 76.5% | 72.8% | (many diffs) |
| 13 | human | 100996709 | LOC100996709 | ADP-ribosylation factor-lik... | XM_006725284.3 | 76.5% | 72.8% | (many diffs) |
| 14 | human | 100996709 | LOC100996709 | ADP-ribosylation factor-lik... | XM_024452506.1 | 76.5% | 72.8% | (many diffs) |
| 15 | human | 100996709 | LOC100996709 | ADP-ribosylation factor-lik... | XM_024452507.1 | 76.5% | 72.8% | (many diffs) |
| 16 | human | 100996709 | LOC100996709 | ADP-ribosylation factor-lik... | XM_011546390.3 | 67.5% | 58.5% | (many diffs) |
| 17 | human | 107984156 | LOC107984156 | ADP-ribosylation factor-lik... | XM_011546376.3 | 67.2% | 57.8% | (many diffs) |
| 18 | human | 51326 | ARL17A | ADP ribosylation factor lik... | NM_001288811.1 | 64.9% | 62.7% | (many diffs) |
| 19 | human | 100506084 | ARL17B | ADP ribosylation factor lik... | NM_001039083.4 | 52.9% | 51.1% | (many diffs) |
| 20 | human | 51326 | ARL17A | ADP ribosylation factor lik... | NM_001113738.1 | 52.9% | 51.1% | (many diffs) |
| 21 | human | 100506084 | ARL17B | ADP ribosylation factor lik... | NM_001363805.1 | 51.7% | 50% | (many diffs) |
| 22 | human | 51326 | ARL17A | ADP ribosylation factor lik... | XM_011524877.3 | 51.7% | 50% | (many diffs) |
| 23 | human | 100996709 | LOC100996709 | ADP-ribosylation factor-lik... | XM_011546389.2 | 51.7% | 50% | (many diffs) |
| 24 | human | 107984156 | LOC107984156 | ADP-ribosylation factor-lik... | XM_011546369.3 | 51.6% | 49.4% | (many diffs) |
| 25 | human | 51326 | ARL17A | ADP ribosylation factor lik... | XM_011524876.3 | 47.9% | 46.1% | (many diffs) |
| 26 | human | 51326 | ARL17A | ADP ribosylation factor lik... | XM_017024729.2 | 47.9% | 46.1% | (many diffs) |
| 27 | human | 100996709 | LOC100996709 | ADP-ribosylation factor-lik... | XM_017030176.1 | 47.9% | 46.1% | (many diffs) |
| 28 | human | 107984156 | LOC107984156 | ADP-ribosylation factor-lik... | XM_017030180.2 | 47.7% | 45.6% | (many diffs) |
| 29 | human | 51326 | ARL17A | ADP ribosylation factor lik... | XM_011524875.3 | 46.3% | 44.6% | (many diffs) |
| 30 | human | 100996709 | LOC100996709 | ADP-ribosylation factor-lik... | XM_011546387.2 | 46.3% | 44.6% | (many diffs) |
| 31 | human | 107984156 | LOC107984156 | ADP-ribosylation factor-lik... | XM_011546367.3 | 46.1% | 44.1% | (many diffs) |
| 32 | human | 107984156 | LOC107984156 | ADP-ribosylation factor-lik... | XM_017030179.2 | 43.4% | 41.4% | (many diffs) |
| 33 | human | 107984156 | LOC107984156 | ADP-ribosylation factor-lik... | XR_002958882.1 | 34.1% | (many diffs) | |
| 34 | human | 51326 | ARL17A | ADP ribosylation factor lik... | XR_934477.3 | 30.5% | (many diffs) | |
| 35 | human | 100996709 | LOC100996709 | ADP-ribosylation factor-lik... | XR_951555.2 | 29.6% | (many diffs) | |
| 36 | human | 107984156 | LOC107984156 | ADP-ribosylation factor-lik... | XR_001756214.1 | 29.5% | (many diffs) | |
| 37 | human | 51326 | ARL17A | ADP ribosylation factor lik... | XR_934479.2 | 27.7% | (many diffs) | |
| 38 | human | 107984156 | LOC107984156 | ADP-ribosylation factor-lik... | XR_001756211.2 | 27.7% | (many diffs) | |
| 39 | human | 51326 | ARL17A | ADP ribosylation factor lik... | XR_934475.3 | 25.8% | (many diffs) | |
| 40 | human | 100996709 | LOC100996709 | ADP-ribosylation factor-lik... | XR_951553.3 | 25.1% | (many diffs) | |
| 41 | human | 51326 | ARL17A | ADP ribosylation factor lik... | XR_934476.3 | 24.8% | (many diffs) | |
| 42 | human | 100996709 | LOC100996709 | ADP-ribosylation factor-lik... | XR_951558.2 | 23.3% | (many diffs) | |
| 43 | human | 107984156 | LOC107984156 | ADP-ribosylation factor-lik... | XR_001756217.1 | 23.2% | (many diffs) | |
| 44 | human | 107984156 | LOC107984156 | ADP-ribosylation factor-lik... | XR_001756218.2 | 21.7% | (many diffs) | |
| 45 | human | 100996709 | LOC100996709 | ADP-ribosylation factor-lik... | XR_951557.2 | 19.4% | (many diffs) | |
| 46 | human | 107984156 | LOC107984156 | ADP-ribosylation factor-lik... | XR_001756215.1 | 19.3% | (many diffs) | |
| 47 | human | 107984156 | LOC107984156 | ADP-ribosylation factor-lik... | XR_002958881.1 | 18.5% | (many diffs) | |
| 48 | human | 100996709 | LOC100996709 | ADP-ribosylation factor-lik... | XR_001756189.1 | 18.1% | (many diffs) | |
| 49 | human | 100996709 | LOC100996709 | ADP-ribosylation factor-lik... | XR_951554.2 | 17.9% | (many diffs) | |
| 50 | human | 107984156 | LOC107984156 | ADP-ribosylation factor-lik... | XR_001756213.2 | 17.8% | (many diffs) | |
| 51 | human | 107984156 | LOC107984156 | ADP-ribosylation factor-lik... | XR_001756210.2 | 17.1% | (many diffs) | |
| 52 | human | 100996709 | LOC100996709 | ADP-ribosylation factor-lik... | XR_951556.2 | 15.1% | (many diffs) | |
| 53 | human | 51326 | ARL17A | ADP ribosylation factor lik... | XR_934478.3 | 14.2% | (many diffs) | |
| 54 | human | 107984156 | LOC107984156 | ADP-ribosylation factor-lik... | XR_002958883.1 | 12.3% | (many diffs) | |
| 55 | human | 51326 | ARL17A | ADP ribosylation factor lik... | XR_934480.3 | 11% | (many diffs) | |
| 56 | human | 107984156 | LOC107984156 | ADP-ribosylation factor-lik... | XR_001756216.2 | 10.9% | (many diffs) | |
| 57 | human | 107984156 | LOC107984156 | ADP-ribosylation factor-lik... | XR_001756212.2 | 10.6% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 72
- ORF end:
- 381
- ORF length:
- 309
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 caggcttcac catgggaaac atttttgaaa agctctttaa aagtctactt gggaaaaaaa 121 agatgcggat tcttatattg agtttGGATA CAGCTGGAAA AACCACCATC TTGTATAAAT 181 TGAAGCTGGG GGAGACTGTG CCTGCCGTCC CTACAGTAGG TTTCTGTGTG GAGACAGTAG 241 AATATAAAAA TAACACCTTC GCTGTCTGGG ATGTTGGCAG CCACTTCAAA ATCAGACCTC 301 TGTGGCAGCA TTTTTTCCAG AACACAAAAG GTAAAGATTA TTCGGTTTGT AGCCTCGATA 361 CTGTTTCTGT GAAATGTCTC TAGAACCCAG CTTTCTTGTA CAAAGTGGTT GATATCGGTA 421 AGCCTATCCC TAACCCTCTC CTCGGTCTCG ATTCTACGTA GTAATGAACT AGTCCGTAAC 481 TTGAAAGTAT TTCGATTTCT TGGCTTTATA TATCTTGTGG AAAGGACGAA CTAATCGTCT 541 ACCCTGAGCT CTTACGCGTT AAGTCgacaa tcaacctctg gattacaaaa tttgtgaaag 601 att