Construct: ORF TRCN0000491309

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF019793.2_s317c1
DNA Barcode:
TGCTTGGCTGCTGCTTGCCCCTTC
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
FDPS (2224)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000491309
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 2224 FDPS farnesyl diphosphate synthase NM_001135821.2 99.9% 99.7% 1257_1258insG
2 human 2224 FDPS farnesyl diphosphate synthase NM_002004.4 99.9% 99.7% 1257_1258insG
3 human 2224 FDPS farnesyl diphosphate synthase XM_024454066.1 92.2% 92% 922_1026del;1362_1363insG
4 human 2224 FDPS farnesyl diphosphate synthase XM_024454070.1 92.2% 92% 922_1026del;1362_1363insG
5 human 2224 FDPS farnesyl diphosphate synthase NM_001135822.2 84.1% 84% 0_1ins198;1059_1060insG
6 human 2224 FDPS farnesyl diphosphate synthase NM_001242824.2 84.1% 84% 0_1ins198;1059_1060insG
7 human 2224 FDPS farnesyl diphosphate synthase XM_005244962.1 84.1% 84% 0_1ins198;1059_1060insG
8 human 2224 FDPS farnesyl diphosphate synthase XM_005244963.1 84.1% 84% 0_1ins198;1059_1060insG
9 human 2224 FDPS farnesyl diphosphate synthase XM_024454071.1 77.6% 77.5% 0_1ins198;724_828del;1164_1165insG
10 human 2224 FDPS farnesyl diphosphate synthase XM_024454072.1 77.6% 77.5% 0_1ins198;724_828del;1164_1165insG
11 human 2224 FDPS farnesyl diphosphate synthase XM_024454073.1 77.6% 77.5% 0_1ins198;724_828del;1164_1165insG
12 human 2224 FDPS farnesyl diphosphate synthase XM_024454074.1 77.6% 77.5% 0_1ins198;724_828del;1164_1165insG
13 human 2224 FDPS farnesyl diphosphate synthase NM_001242825.1 59.1% 59% 0_1ins513;744_745insG
14 human 2224 FDPS farnesyl diphosphate synthase XM_024454076.1 54.5% 54.5% 0_1ins513;409_513del;849_850insG
15 human 619190 FDPSP2 farnesyl diphosphate syntha... NR_003262.1 22.1% (many diffs)
16 mouse 110196 Fdps farnesyl diphosphate synthe... NM_001253751.1 85.5% 83.3% (many diffs)
17 mouse 110196 Fdps farnesyl diphosphate synthe... NM_134469.4 71.8% 70.9% (many diffs)
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Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
1329
ORF length:
1260
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61caggcaccat gcccctgtcc cgctggttga gatctgtggg ggtcttcctg ctgccagccc
121cctactgggc accccgggag aggtggctgg gttccctacg gcggccctcc ctggtgcacg
181ggtacccagt cctggcctgg cacagtgccc gctgctggtg ccaagcgtgg acagaggaac
241ctcgagccct ttgctcctcc ctcagaatga acggagacca gaattcagat gtttatgccc
301aagaaaagca ggatttcgtt cagcacttct cccagatcgt tagggtgctg actgaggatg
361agatggggca cccagagata ggagatgcta ttgcccggct caaggaggtc ctggagtaca
421atgccattgg aggcaagtat aaccggggtt tgacggtggt agtagcattc cgggagctgg
481tggagccaag gaaacaggat gctgatagtc tccagcgggc ctggactgtg ggctggtgtg
541tggaactgct gcaagctttc ttcctggtgg cagatgacat catggattca tcccttaccc
601gccggggaca gatctgctgg tatcagaagc cgggcgtggg tttggatgcc atcaatgatg
661ctaacctcct ggaagcatgt atctaccgcc tgctgaagct ctattgccgg gagcagccct
721attacctgaa cctgatcgag ctcttcctgc agagttccta tcagactgag attgggcaga
781ccctggacct cctcacagcc ccccagggca atgtggatct tgtcagattc actgaaaaga
841ggtacaaatc tattgtcaag tacaagacag ctttctactc cttctacctt cctatagctg
901cagccatgta catggcagga attgatggcg agaaggagca cgccaatgcc aagaagatcc
961tgctggagat gggggagttc tttcagattc aggatgatta ccttgacctc tttggGGACC
1021CCAGTGTGAC CGGCAAAATT GGCACTGACA TCCAGGACAA CAAATGCAGC TGGCTGGTGG
1081TTCAGTGTCT GCAACGGGCC ACTCCAGAAC AGTACCAGAT CCTGAAGGAA AATTACGGGC
1141AGAAGGAGGC TGAGAAAGTG GCCCGGGTGA AGGCGCTATA TGAGGAGCTG GATCTGCCAG
1201CAGTGTTCTT GCAATATGAG GAAGACAGTT ACAGCCACAT TATGGCTCTC ATTGAACAGT
1261ACGCAGCACC CCTGCCCCCA GCCGTCTTTC TGGGGCTTGC GCGCAAAATC TACAAGCGGA
1321GAAAGGACCC AGCTTTCTTG TACAAAGTGG TTGATATCGG TAAGCCTATC CCTAACCCTC
1381TCCTCGGTCT CGATTCTACG TAGTAATGAA CTAGTCCGTA ACTTGAAAGT ATTTCGATTT
1441CTTGGCTTTA TATATCTTGT GGAAAGGACG ATGCTTGGCT GCTGCTTGCC CCTTCACGCG
1501TTAAGTCgac aatcaacctc tggattacaa aatttgtgaa agatt

Download FASTA (ORF) (Full)