Construct: ORF TRCN0000491464

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF003125.1_s317c1
Derived from:
ccsbBroadEn_12370
DNA Barcode:
CGAGTGGTTGACCCCTTCCATATA
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
CFAP97 (57587)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000491464
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 57587 CFAP97 cilia and flagella associat... NM_001292033.2 99.8% 99.7% 240C>T;712A>G
2 human 57587 CFAP97 cilia and flagella associat... NM_020827.3 83.4% 82.4% (many diffs)
3 human 57587 CFAP97 cilia and flagella associat... XM_017008483.2 83.4% 82.4% (many diffs)
4 human 57587 CFAP97 cilia and flagella associat... XM_017008484.2 83.4% 82.4% (many diffs)
5 human 57587 CFAP97 cilia and flagella associat... XM_017008486.2 83.4% 82.4% (many diffs)
6 human 57587 CFAP97 cilia and flagella associat... XM_024454160.1 83.4% 82.4% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1425
ORF length:
1359
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgga tcagtttgga gatatattag aaggtgaagt ggaccattct ttctttgaca
121gtgactttga agaaggaaag aaatgtgaaa ctaactcagt ttttgacaag caaaatgatg
181acccaaagga aagaatagat aaagatacaa aaaatgtaaa ttcgaacact ggaatgcaaa
241caacagaaaa ttatcttact gagaagggaa atgaaagaaa cgtgaaattt cccccagaac
301accctgtaga gaatgatgtt acacaaactg taagttcttt ctcattgcca gcctcttcaa
361gatcaaaaaa attgtgtgat gttacaacag gacttaaaat acacgtgtcc attccaaata
421gaattcccaa aattgtaaaa gaaggtgaag atgattacta cacagatgga gaggaaagca
481gtgatgatgg gaagaaatac catgtgaagt ccaagtccgc taaaccatct actaacgtta
541aaaaaagcat aaggaaaaag tattgcaaag ttagctcctc ttcctcctcc tctttatctt
601cctcatcttc aggttcaggt acagattgtt tagatgcagg gtctgatagc catctatctg
661attcgtctcc gtcatctaag tcatctaaga aacatgtatc tggtataacc ctcctgtcac
721caaaacacaa gtataaatca ggaataaaat cgacagaaac acagccttca agtactgcac
781caaaatgtgg ccactaccct gaggagtctg aagatactgt gactgacgta agtcccttat
841caactccaga cattagccct cttcagtctt ttgaactggg catagcaaat gatcaaaaag
901tgaaaattaa aaagcaagaa aatgtgagcc aagaaatata tgaagatgtt gaggatttga
961aaaataattc aaaatatttg aaagcagcca aaaaagggaa agaaaaacat gagcctgatg
1021tctccTCAAA GTCGTCTTCA GTGTTAGACT CCAGTTTAGA CCACAGACAT AAACAGAAAG
1081TCTTACATGA CACAATGGAT CTGAATCATC TCTTGAAAGC TTTTCTGCAA TTAGATAAAA
1141AAGGACCACA AAAACATCAC TTTGATCAGC CTTCAGTAGC ACCCGGGAAA AACTACTCTT
1201TCACAAGAGA AGAGGTGAGA CAGATCGATC GGGAAAATCA GAGGCTTTTG AAAGAACTGT
1261CAAGACAGGC GGAAAAGCCG GGAAGCAAAA GTACAATTCC TAGATCGGCT GATCATCCCC
1321CAAAGTTATA TCACAGTGCT CTCAACAGAC AGAAGGAACA ACAAAGGATT GAGAGAGAAA
1381ACTTGACTAT CTCGCTCTGT CACCCAGGCT GGAGTGCAGT GACGTGCCCA ACTTTCTTGT
1441ACAAAGTGGT TGATATCGGT AAGCCTATCC CTAACCCTCT CCTCGGTCTC GATTCTACGT
1501AGTAATGAAC TAGTCCGTAA CTTGAAAGTA TTTCGATTTC TTGGCTTTAT ATATCTTGTG
1561GAAAGGACGA CGAGTGGTTG ACCCCTTCCA TATAACGCGT TAAGTCgaca atcaacctct
1621ggattacaaa atttgtgaaa gatt

Download FASTA (ORF) (Full)