Construct: ORF TRCN0000491480

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF021519.2_s317c1
DNA Barcode:
GAATACGCGCGTGTCACATCCGTC
Epitope Tag:
V5 (not translated due to prior stop codon)
Notes:
Has stop codon in insert

Originally Annotated References:

Gene:
KIF3C (3797)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000491480
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 3797 KIF3C kinesin family member 3C XM_005264299.3 95% 94.9% 1890_2006del
2 human 3797 KIF3C kinesin family member 3C NM_002254.8 94.9% 94.8% 1890_2009del
3 mouse 16570 Kif3c kinesin family member 3C NM_008445.2 84.6% 90.3% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
2328
ORF length:
2259
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61caggcaccat ggccagtaag accaaggcca gcgaggccct caaggtggtg gcccggtgcc
121gccccctcag caggaaggag gaggctgctg gtcacgagca gatcctgacc atggacgtga
181aactgggcca ggtgaccctg cggaaccccc gcgccgcccc gggggagctg cccaagacct
241tcacctttga cgccgtgtat gatgccagct ccaagcaggc cgacctgtat gacgaaaccg
301tgaggcccct gatagactcc gtgctccagg gtttcaatgg cacggtgttt gcctatggcc
361agacgggcac tggcaagacc tataccatgc aggggacctg ggtggagccc gagctgcgcg
421gggtcatccc gaatgccttt gagcacatct tcacccacat ctcccgctcc cagaaccaac
481agtacctggt ccgggcctcc tatttggaga tctaccagga agagattcga gacctgctct
541ccaaggagcc gggcaagagg ctagagctga aagagaaccc cgagactggc gtctacatca
601aggacctctc ctccttcgtc accaagaatg tcaaggagat tgagcatgtg atgaacctgg
661ggaaccagac ccgggctgtg ggcagcaccc acatgaatga ggtcagctcc cgctcccatg
721ccatcttcat catcactgtg gagtgcagcg aacgtggctc tgatggccag gaccacatcc
781gagtgggcaa gctcaacctc gtggacctgg ctggcagcga gaggcagaac aaggcaggcc
841ccaacacagc gggaggggca gccacaccat cctcgggtgg cggtggtggc ggtggaggca
901gtggtggtgg tgctggtgga gagaggccta aggaagcctc caaaatcaac ctctcattat
961ctgccctggg caacgtgatt gctgccctgg cgggcaacag gagcacccac attccctacc
1021gggactccaa gctgacccgg ctgctccagg actccctggg ggggaatgcc aagaccatca
1081tggtagccac actggggcca gcttctcaca gctacgatga gagcctctcc accttgcgct
1141ttgccaaccg agccaagaac atcaagaaca agccccgggt gaacgaggac cccaaggaca
1201cactgctgcg ggaattccaa gaggagattg cccgcctgaa ggcccagctg gagaagaggg
1261ggatgctggg gaagcggccc cggaggaaga gcagccgcag gaagaaggcc gtgtccgccc
1321cgcctgggta ccctgagggc ccagtgattg aggcctgggt ggcagaagag gaggatgaca
1381acaacaacaa ccaccgcccg ccccagccca tcctggagtc agccttggag aagaacatgg
1441agaattacct gcaggaacag aaggagcggc tggaggagga gaaggcagcc atccaggatg
1501accgcagcct ggtgagcgag gagaagcaga agctgctgga ggagaaggag aagatgctgg
1561aggacctgcg gcgggaacag caggccacag agctgcttgc ggccaagtac aaggccatgg
1621agagcaagct cctcatcggg ggcaggaaca tcatggatca caccaacgaa cagcagaaga
1681tgttggaact gaagaggcag gagattgccg agcagaaacg tcgtgagcgg gagatgcagc
1741aggagatgat gctccgggac gaggagacta tggagctccg gggcacctac acatccctgc
1801agcaggaggt ggaggtcaaa accaagaaac tcaagaagct ctacgccaag ctgcaggcgg
1861tgaaggcgga gatccaggac cagcatgatg agtatatccg cgtgcggcag gacctggagg
1921aggcgcagaa cgagcagacc cgcgaactca agctcaatag cagccagatg aagaagcggc
1981caacatctgc agtgggctac aagaggccta tcagccagta tgctcgggtt gccatGGCAA
2041TGGGGTCCCA CCCCAGGTAC AGGGCTGAAA ACATAATGTT TCTGGAGTTG GATGTGTCCC
2101CTCCAGCTGT CTTTGAGATG GAATTCTCTC ACGACCAAGA ACAAGACCCT CGTGCGCTAC
2161ACATGGAGAG GCTCATGCGA TTGGACAGCT TTCTGGAAAG ACCTTCCACG TCTAAAGTCC
2221GAAAGTCCAG ATCCTGGTGC CAGAGTCCTC AGCGGCCTCC ACCTTCCACC ACACATGCCT
2281CCCTGGCCTC TGCTTCTCTG CGCCCTGCAA CAGTGGCGGA CCATGAGTGA GACCCAGCTT
2341TCTTGTACAA AGTGGTTGAT ATCGGTAAGC CTATCCCTAA CCCTCTCCTC GGTCTCGATT
2401CTACGTAGTA ATGAACTAGT CCGTAACTTG AAAGTATTTC GATTTCTTGG CTTTATATAT
2461CTTGTGGAAA GGACGAGAAT ACGCGCGTGT CACATCCGTC ACGCGTTAAG TCgacaatca
2521acctctggat tacaaaattt gtgaaagatt

Download FASTA (ORF) (Full)