Construct: ORF TRCN0000491505

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF000106.1_s317c1
Derived from:
ccsbBroadEn_08413
DNA Barcode:
TGAATTGTCGCCCCCAGATACACC
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
ZCCHC10 (54819)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000491505
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 54819 ZCCHC10 zinc finger CCHC-type conta... NM_017665.4 100% 100%
2 human 54819 ZCCHC10 zinc finger CCHC-type conta... NM_001300819.3 91.7% 91.7% 199_200ins42
3 human 54819 ZCCHC10 zinc finger CCHC-type conta... NM_001300816.3 88.5% 88.5% 42_107del
4 human 54819 ZCCHC10 zinc finger CCHC-type conta... NM_001300817.3 85.4% 85.4% 42_107del;309_310insAGGTCTAAGAGTGTAACC
5 human 54819 ZCCHC10 zinc finger CCHC-type conta... NM_001308127.2 84.1% 84.1% 42_137del
6 human 54819 ZCCHC10 zinc finger CCHC-type conta... NM_001300818.3 81.2% 81.2% 42_107del;265_266ins42
7 human 54819 ZCCHC10 zinc finger CCHC-type conta... XM_011543502.1 77.2% 77.2% 42_137del;295_296ins42
8 human 54819 ZCCHC10 zinc finger CCHC-type conta... NM_001308128.2 68.2% 68.2% 41_42ins162
9 human 54819 ZCCHC10 zinc finger CCHC-type conta... NM_001308129.2 60% 60% 41_42ins204
10 human 54819 ZCCHC10 zinc finger CCHC-type conta... NM_001308130.2 46% 41.4% 202_229del;276_277ins262
11 human 54819 ZCCHC10 zinc finger CCHC-type conta... NM_001300822.3 41% 36.8% 42_107del;268_295del;342_343ins262
12 human 54819 ZCCHC10 zinc finger CCHC-type conta... XM_011543503.2 39.1% 35% 42_137del;298_325del;372_373ins262
13 human 54819 ZCCHC10 zinc finger CCHC-type conta... NR_125337.3 23.9% 1_12del;54_57delGTAA;527_2127del
14 human 54819 ZCCHC10 zinc finger CCHC-type conta... NR_131767.2 23.6% (many diffs)
15 human 54819 ZCCHC10 zinc finger CCHC-type conta... NR_131766.2 22.4% (many diffs)
16 mouse 67966 Zcchc10 zinc finger, CCHC domain co... NM_026479.4 79.1% 83.3% (many diffs)
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Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
576
ORF length:
510
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatggc gactcccatg catcggctaa tagcccggag acaagctgaa gcaaataagc
121aacatgtaag atgtcagaaa tgcttggaat ttggacattg gacttatgaa tgcacaggaa
181aaagaaaata ccTACATAGG CCCTCAAGGA CAGCAGAACT AAAGAAAGCT TTAAAAGAAA
241AAGAAAACAG ATTATTATTG CAACAAAGCA TTGGAGAAAC CAATGTAGAA AGAAAGGCCA
301AGAAAAAAAG GTCTAAGAGT GTAACCAGTT CCAGTAGCAG TAGCAGTGAC AGTTCTGCCA
361GTGATTCTTC ATCAGAGAGT GAAGAAACAT CTACCTCTTC CTCCTCAGAG GACAGTGACA
421CTGATGAAAG CTCCTCTAGT TCCTCATCCT CAGCCTCCTC CACAACCTCT TCCTCCTCCT
481CTGATTCAGA CTCAGATTCC AGCTCTTCCA GTAGCAGTAG CACCAGCACA GATAGCAGCT
541CTGACGATGA ACCACCAAAG AAGAAGAAAA AGAAATACCC AACTTTCTTG TACAAAGTGG
601TTGATATCGG TAAGCCTATC CCTAACCCTC TCCTCGGTCT CGATTCTACG TAGTAATGAA
661CTAGTCCGTA ACTTGAAAGT ATTTCGATTT CTTGGCTTTA TATATCTTGT GGAAAGGACG
721ATGAATTGTC GCCCCCAGAT ACACCACGCG TTAAGTCgac aatcaacctc tggattacaa
781aatttgtgaa agatt

Download FASTA (ORF) (Full)