Construct: ORF TRCN0000491531

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF001762.1_s317c1
Derived from:
ccsbBroadEn_07605
DNA Barcode:
CGAAACCGTATGGCCATTAATGCT
Epitope Tag:
V5 (not translated due to frame shift)
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
LYPLA1 (10434)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000491531
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 10434 LYPLA1 lysophospholipase 1 NM_006330.4 100% 100%
2 human 10434 LYPLA1 lysophospholipase 1 NM_001279358.2 93.9% 93.9% 459_460ins42
3 human 10434 LYPLA1 lysophospholipase 1 NM_001279357.2 93% 93% 167_168ins48
4 human 10434 LYPLA1 lysophospholipase 1 XM_017012956.2 90.4% 90.4% 101_102ins66
5 human 10434 LYPLA1 lysophospholipase 1 NM_001279356.1 85.2% 85.2% 357_358ins102
6 human 10434 LYPLA1 lysophospholipase 1 NM_001279359.2 78.6% 76% 0_1ins107;20_21ins40
7 human 10434 LYPLA1 lysophospholipase 1 XM_005251127.5 78.6% 76% 0_1ins107;20_21ins40
8 human 10434 LYPLA1 lysophospholipase 1 XM_017012957.2 78.6% 76% 0_1ins107;20_21ins40
9 human 10434 LYPLA1 lysophospholipase 1 XM_017012958.1 72.6% 70% 0_1ins107;20_21ins40;312_313ins42
10 human 10434 LYPLA1 lysophospholipase 1 NM_001279360.1 72.1% 72.1% 0_1ins192
11 human 10434 LYPLA1 lysophospholipase 1 XM_017012959.1 72.1% 72.1% 0_1ins192
12 human 10434 LYPLA1 lysophospholipase 1 XM_017012960.1 72.1% 72.1% 0_1ins192
13 human 10434 LYPLA1 lysophospholipase 1 XR_001745453.1 24% 1_174del;460_461ins74;791_2491del
14 human 10434 LYPLA1 lysophospholipase 1 XR_001745454.1 21.9% (many diffs)
15 mouse 18777 Lypla1 lysophospholipase 1 NM_008866.2 88.5% 91.7% (many diffs)
16 mouse 18777 Lypla1 lysophospholipase 1 XM_006495472.3 66.6% 68.6% (many diffs)
17 mouse 18777 Lypla1 lysophospholipase 1 XM_006495471.3 60% 61.3% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
756
ORF length:
690
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgtg cggcaataac atgtcaaccc cgctgcccgc catcgtgccc gccgcccgga
121aggccaccgc tgcggtgatt ttcctgcatg gattgggaga tactgggcac ggatgggcag
181aagcctttgc aggtatcaga agttcacata tcaaatatat ctgcccgcat gcgcctgtta
241ggcctgttac attaaatatg aacgtggcta tgccttcatg gtttgatatt attgggcttt
301caccagattc acaggaggat gaatctggga ttaaacaggc agcagaaaat ataaaagctt
361tgattgatca agaagtgaag aatggcattc cttctaacag aattattttg ggagggtttt
421ctcaggGAGG AGCTTTATCT TTATATACTG CCCTTACCAC ACAGCAGAAA CTGGCAGGTG
481TCACTGCACT CAGTTGCTGG CTTCCACTTC GGGCTTCCTT TCCACAGGGT CCTATCGGTG
541GTGCTAATAG AGATATTTCT ATTCTCCAGT GCCACGGGGA TTGTGACCCT TTGGTTCCCC
601TGATGTTTGG TTCTCTTACG GTGGAAAAAC TAAAAACATT GGTGAATCCA GCCAATGTGA
661CCTTTAAAAC CTATGAAGGT ATGATGCACA GTTCGTGTCA ACAGGAAATG ATGGATGTCA
721AGCAATTCAT TGATAAACTC CTACCTCCAA TTGATGCCGC CCAACTTTCT TGTACAAAGT
781GGTTGATATC GGTAAGCCTA TCCCTAACCC TCTCCTCGGT CTCGATTCTA CGTAGTAATG
841AACTAGTCCG TAACTTGAAA GTATTTCGAT TTCTTGGCTT TATATATCTT GTGGAAAGGA
901CGACGAAACC GTATGGCCAT TAATGCTACG CGTTAAGTCg acaatcaacc tctggattac
961aaaatttgtg aaagatt

Download FASTA (ORF) (Full)