Construct: ORF TRCN0000491611

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF012260.1_s317c1
Derived from:
ccsbBroadEn_13905
DNA Barcode:
CAACTGATAGAAATCAATCTATCA
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
MXI1 (4601)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000491611
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 4601 MXI1 MAX interactor 1, dimerizat... NM_005962.5 92.7% 92.7% (many diffs)
2 human 4601 MXI1 MAX interactor 1, dimerizat... NM_130439.3 79.3% 79.3% 1_183del
3 human 4601 MXI1 MAX interactor 1, dimerizat... NM_001008541.1 77.7% 77.7% 0_1ins126;97_98ins30
4 mouse 17859 Mxi1 MAX interactor 1, dimerizat... NM_010847.3 85.1% 89.3% (many diffs)
5 mouse 17859 Mxi1 MAX interactor 1, dimerizat... XM_017318079.1 81.6% 82.9% (many diffs)
6 mouse 17859 Mxi1 MAX interactor 1, dimerizat... NM_001008543.2 75% 78.6% (many diffs)
7 mouse 17859 Mxi1 MAX interactor 1, dimerizat... XM_006526738.1 75% 78.6% (many diffs)
8 mouse 17859 Mxi1 MAX interactor 1, dimerizat... XM_006526739.1 75% 78.6% (many diffs)
9 mouse 17859 Mxi1 MAX interactor 1, dimerizat... XM_006526740.1 75% 78.6% (many diffs)
10 mouse 17859 Mxi1 MAX interactor 1, dimerizat... NM_001008542.2 73.3% 76.6% (many diffs)
11 mouse 17859 Mxi1 MAX interactor 1, dimerizat... XM_006526735.3 70.1% 73.2% (many diffs)
12 mouse 17859 Mxi1 MAX interactor 1, dimerizat... XM_006526741.2 64.2% 67.8% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
768
ORF length:
702
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgga gaagcacatc aacacttttc tgcagaacgt gcagattctg ctcgaggccg
121ccagctacct ggagcagatc gagaaagaaa acaaaaagtg tgaacatggc tacgcctctt
181cattcccgtc catgccgagc ccccgactgc agcattcaaa gcccccacgg aggttgagcc
241gggcacagaa acacagcagc gggagcagca acaccagcac tgccaacaga tctacacaca
301atgagctgga aaagaatcga cgagctcatc TGCGCCTTTG TTTAGAACGC TTAAAAGTTC
361TGATTCCACT AGGACCAGAC TGCACCCGGC ACACAACACT TGGTTTGCTC AACAAAGCCA
421AAGCACACAT CAAGAAACTT GAAGAAGCTG AAAGAAAAAG CCAGCACCAG CTCGAGAATT
481TGGAACGAGA ACAGAGATTT TTAAAGTGGC GACTGGAACA GCTGCAGGGT CCTCAGGAGA
541TGGAACGAAT ACGAATGGAC AGCATTGGAT CAACTATTTC TTCAGATCGT TCTGATTCAG
601AGCGAGAGGA GATTGAAGTG GATGTTGAAA GCACAGAGTT CTCCCATGGA GAAGTGGACA
661ATATAAGTAC CACCAGCATC AGTGACATTG ATGACCACAG CAGCCTGCCG AGTATTGGGA
721GTGACGAGGG TTACTCCAGT GCCAGTGTCA AACTTTCATT CACTTCATAC CCAACTTTCT
781TGTACAAAGT GGTTGATATC GGTAAGCCTA TCCCTAACCC TCTCCTCGGT CTCGATTCTA
841CGTAGTAATG AACTAGTCCG TAACTTGAAA GTATTTCGAT TTCTTGGCTT TATATATCTT
901GTGGAAAGGA CGACAACTGA TAGAAATCAA TCTATCAACG CGTTAAGTCg acaatcaacc
961tctggattac aaaatttgtg aaagatt

Download FASTA (ORF) (Full)