Transcript: Human NM_001008541.1

Homo sapiens MAX interactor 1, dimerization protein (MXI1), transcript variant 3, mRNA.

Source:
NCBI, updated 2019-08-04
Taxon:
Homo sapiens (human)
Gene:
MXI1 (4601)
Length:
3047
CDS:
121..669

Additional Resources:

NCBI RefSeq record:
NM_001008541.1
NBCI Gene record:
MXI1 (4601)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001008541.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000424744 GAACCCTTCCTGAGCTTTATG pLKO_005 1048 3UTR 100% 13.200 10.560 N MXI1 n/a
2 TRCN0000369198 CATGGAGAAGTGGACAATATA pLKO_005 544 CDS 100% 15.000 10.500 N MXI1 n/a
3 TRCN0000369264 GACAGCATTGGATCAACTATT pLKO_005 457 CDS 100% 13.200 9.240 N MXI1 n/a
4 TRCN0000020476 CCTCAGGAGATGGAACGAATA pLKO.1 430 CDS 100% 10.800 7.560 N MXI1 n/a
5 TRCN0000342817 CCTCAGGAGATGGAACGAATA pLKO_005 430 CDS 100% 10.800 7.560 N MXI1 n/a
6 TRCN0000173456 GAATGGACAGCATTGGATCAA pLKO.1 452 CDS 100% 4.950 3.465 N Mxi1 n/a
7 TRCN0000020478 GCACACATCAAGAAACTTGAA pLKO.1 322 CDS 100% 4.950 3.465 N MXI1 n/a
8 TRCN0000194207 GCACACATCAAGAAACTTGAA pLKO.1 322 CDS 100% 4.950 3.465 N Mxi1 n/a
9 TRCN0000342878 GCACACATCAAGAAACTTGAA pLKO_005 322 CDS 100% 4.950 3.465 N MXI1 n/a
10 TRCN0000020474 GCTCATTTCATGCTCTGCAAA pLKO.1 1230 3UTR 100% 4.950 3.465 N MXI1 n/a
11 TRCN0000342818 GCTCATTTCATGCTCTGCAAA pLKO_005 1230 3UTR 100% 4.950 3.465 N MXI1 n/a
12 TRCN0000020475 CGCCTTTGTTTAGAACGCTTA pLKO.1 232 CDS 100% 4.050 2.835 N MXI1 n/a
13 TRCN0000020477 CGAGAGGAGATTGAAGTGGAT pLKO.1 502 CDS 100% 2.640 1.848 N MXI1 n/a
14 TRCN0000173886 GCTCAACAAAGCCAAAGCACA pLKO.1 306 CDS 100% 2.640 1.848 N Mxi1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001008541.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 TRCN0000491611 CAACTGATAGAAATCAATCTATCA pLX_317 62% 77.7% 77.7% V5 0_1ins126;97_98ins30 n/a
2 ccsbBroadEn_13905 pDONR223 100% 77.6% 77.3% None 0_1ins126;97_98ins30;527T>N n/a
3 ccsbBroad304_13905 pLX_304 0% 77.6% 77.3% V5 0_1ins126;97_98ins30;527T>N n/a
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