Construct: ORF TRCN0000491664

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF016051.1_s317c1
Derived from:
ccsbBroadEn_08248
DNA Barcode:
GTCGCTCCCCGTTACGTCTCCTAC
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
IPO11 (51194)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000491664
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 51194 IPO11 importin 11 NM_016338.4 99.9% 100% 783G>T
2 human 51194 IPO11 importin 11 NM_001134779.1 96% 96% 1_120del;903G>T
3 mouse 76582 Ipo11 importin 11 NM_029665.3 90.4% 96.8% (many diffs)
4 mouse 76582 Ipo11 importin 11 XM_017315635.1 90.3% 96.6% (many diffs)
5 mouse 76582 Ipo11 importin 11 XM_006517786.3 89.6% 95.9% (many diffs)
6 mouse 76582 Ipo11 importin 11 XM_006517787.2 89.5% 95.7% (many diffs)
7 mouse 76582 Ipo11 importin 11 XM_011244707.2 82.4% 84.1% (many diffs)
8 mouse 76582 Ipo11 importin 11 XM_006517788.3 79.5% 84.7% (many diffs)
9 mouse 76582 Ipo11 importin 11 XR_382746.2 72.4% (many diffs)
10 mouse 76582 Ipo11 importin 11 XM_011244708.2 63.5% 67.7% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
2991
ORF length:
2925
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgga tctcaatagt gccagcactg ttgttcttca ggtgttaaca caggccacca
121gtcaggatac tgctgtgtta aaaccagctg aggagcagtt gaagcagtgg gagacacagc
181caggtttcta ttcagtgttg ctgaatattt tcaccaacca cactttggat ataaatgtaa
241ggtggcttgc tgtactgtat tttaaacatg gaattgatcg ctactggaga cgtgtagcac
301ctcatgctct ctcagaggag gagaaaacta ctctgcgtgc agggctcatc accaacttca
361atgaaccaat aaaccagatt gcaactcaga ttgcagtgct cattgcaaaa gttgctagat
421tggattgtcc cagacagtgg cctgaactaa ttcccactct tatagagtct gttaaagtcc
481aggatgatct tcgacagcac agagcattac ttaccttcta tcatgttacc aagacactgg
541catctaaacg acttgctgct gatagaaaac tattttatga tttagcttct ggaatttata
601attttgcctg ctctctgtgg aatcaccaca cagacacatt cctgcaagaa gtttcttctg
661gcaatgaagc tgcaattttg agttcactag aacgaacact gctatcattg aaagtgctgc
721gtaagttaac tgttaatgga tttgtggaac ctcataagaa tatggaggtg atgggttttt
781tacatggaat atttgaacgt ctaaaacagt ttctggaatg cagtagaagt ataggtacag
841ataatgtttg tagagataga ctggaaaaga ccatcattct ttttactaaa gtgcttttgg
901acttcttgga tcagcatcct ttttcattta ctcctctaat tcagagatca ctggaatttt
961ctgtaagcta tgtttttaca gaagttggtg aaggcgttac atttgaacga ttcattgtcc
1021aatgtatgaa tcttattaag atgattgtca aaaattatgc ttataagcca tccaaaaatt
1081ttgaagatag cagccctgaa actcttgaag cccataagat taagatggca ttcttcacat
1141atcctacttt gacagagata tgtagaagat tagtctctca ttatttccta ttaactgaag
1201aagaactgac aatgtgggaa gaagacccag aaggctttac agtggaagaa acaggaggag
1261attcttggaa atatagtttg aggccatgca ctgaagtatt atttatagat atattccatg
1321aatataatca gactcttact cctgtacttc tagaaatgat gcaaacactt caaggaccca
1381caaatgtgga agatatgaat gcactgttaa tcaaagatgc tgtgtataat gctgttggat
1441tagctgctta tgagctcttt gacagtgttg attttgatca gtggtttaaa aaccagcttc
1501ttccagaatt acaagtcatt cacaataggt ataagccatt gcgacgcagg gtgatttggc
1561tcatcggtca gtggatttct gtgaaattca agtctgactt aagacccatg ctttatgaag
1621caatctgtaa cttgcttcaa gatcaagatt tagtggtccg tattgaaaca gctacaactt
1681tgaagttaac tgttgatgat tttgaattta gaacagatca gtttctaccg tatttggaaa
1741ccatgttcac actacttttt cagttactgc agcaagttac agaatgtgac acaaagatgc
1801atgttttgca tgtcctttct tgtgtgatcg aaagagtcaa catgcagata cgaccatatg
1861tgggatgttt ggtacaatat ttgcccctcc tttggaagca gagtgaagaa cacaatatgt
1921tgagatgtgc tattttgaca acacttattc atcttgttca gggattagga gcagacagca
1981agaacctgta ccctttcctg ctcccagtta ttcaactgag tacagatgtt tcacagcctc
2041cacatgttta tcttctggaa gatggtttag aattatggtt agtaactttg gaaaacagtc
2101catgtattac accagagttg cttcgtatat ttcagaatat gtcaccactt cttgaactaa
2161gttcagaaaa tcttagaact tgctttaaga tcatcaatgg ttatatcttt ttatcatcaa
2221cagaattttt acagacatac gcagtaggtc tatgccagtc cttttgtgaa cttttaaagg
2281aaattactac agaaggtcaa gttcaggtgc tcaaggttgt ggaaaatgcc cttaaagtga
2341acccaatact aggtccacaa atgtttcaac cgattttacc ctatgttttc aagggtatta
2401tagaagggga gaggtatcct gtagtgatgt ccacgtatct tggagttatg ggtcgagttc
2461tactacaaaa cactagtttt ttttcttcac tacttaatga gatggcccat aaatttaatc
2521aggagatgga ccagcttttg ggaaatatga ttgaaatgtg ggttgatcga atggacaaca
2581ttacccagcc tgaaagaaga aaactttcag ctttggcttt gctctctctt ctgccatctg
2641ataatagtgt tatccaagat aaattctgtg ggattataaa catttcagta gaaggcctgc
2701atgatgtcat gacggaagat cctgaaacag gaacttataa agactgtatg ttgatgtctc
2761atcttgagga accaaaagta acagaagatg aagaaccacC CACAGAACAA GATAAGAGGA
2821AAAAGATGCT GGCCCTGAAG GACCCTGTTC ATACAGTGTC ACTGCAGCAG TTCATCTACG
2881AGAAGCTCAA GGCACAGCAG GAGATGCTAG GAGAACAAGG TTTCCAGTCC CTCATGGAAA
2941CAGTGGATAC GGAGATTGTC ACCCAGCTAC AGGAGTTTTT GCAAGGATTC TACCCAACTT
3001TCTTGTACAA AGTGGTTGAT ATCGGTAAGC CTATCCCTAA CCCTCTCCTC GGTCTCGATT
3061CTACGTAGTA ATGAACTAGT CCGTAACTTG AAAGTATTTC GATTTCTTGG CTTTATATAT
3121CTTGTGGAAA GGACGAGTCG CTCCCCGTTA CGTCTCCTAC ACGCGTTAAG TCgacaatca
3181acctctggat tacaaaattt gtgaaagatt

Download FASTA (ORF) (Full)