Construct: ORF TRCN0000491758

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF008507.1_s317c1
Derived from:
ccsbBroadEn_10010
DNA Barcode:
AAAGACCTTGCATTATAACTTTTC
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
ZNF260 (339324)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000491758
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 339324 ZNF260 zinc finger protein 260 NM_001012756.3 99.8% 100% 1203A>G;1233T>C
2 human 339324 ZNF260 zinc finger protein 260 NM_001166036.2 99.8% 100% 1203A>G;1233T>C
3 human 339324 ZNF260 zinc finger protein 260 NM_001166037.2 99.8% 100% 1203A>G;1233T>C
4 human 339324 ZNF260 zinc finger protein 260 NM_001166038.2 99.8% 100% 1203A>G;1233T>C
5 human 339324 ZNF260 zinc finger protein 260 XM_011526897.2 99.8% 100% 1203A>G;1233T>C
6 human 339324 ZNF260 zinc finger protein 260 XM_017026741.1 99.8% 100% 1203A>G;1233T>C
7 mouse 26466 Zfp260 zinc finger protein 260 NM_011981.4 83.4% 85.6% (many diffs)
8 mouse 26466 Zfp260 zinc finger protein 260 XM_011250583.1 83.4% 85.6% (many diffs)
9 mouse 26466 Zfp260 zinc finger protein 260 XM_011250584.2 83.4% 85.6% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
1305
ORF length:
1236
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcaccat gataggcatg ttggaaagtc ttcagcatga atcagatctc cttcagcatg
121atcaaattca tactggagag aaaccttatg aatgtaatga atgtagaaaa acttttagcc
181tgaagcaaaa ccttgtagag cataagaaaa tgcatactgg agagaaatct catgaatgca
241ctgaatgtgg taaagtgtgc tctcgagtct catctcttac tctacacctt agaagtcaca
301caggaaagaa ggcatataaa tgtaataaat gtggaaaagc cttcagccag aaggaaaact
361tcctttctca tcagaaacat cacactggag agaaacctta tgaatgtgaa aaagtttcta
421ttcagatgcc aaccatcatc agacaccaga aaaatcatac aggaaccaaa ccctatgcat
481gtaaggaatg tggcaaagcc tttaacggca aagcatatct cactgagcat gagaaaattc
541atactggaga aaaaccattt gaatgtaatc agtgtggaag agccttcagc cagaagcaat
601acctcattaa acatcagaac atccatactg gaaagaagcc ctttaaatgt agtgagtgtg
661gaaaagcttt tagccagaag gaaaacctca ttatacatca gagaatccat actggagaga
721aaccttatga atgtaaaggg tgtgggaaag ctttcattca gaagtcaagc ctcattagac
781accagagaag tcacacagga gagaaacctt atacgtgtaa ggaatgtggg aaagccttca
841gtggcaagtc aaatctcaca gagcatgaga aaattcatat tGGAGAGAAA CCCTACAAAT
901GTAATGAATG TGGAACAATC TTCAGGCAGA AGCAATACCT CATTAAACAT CACAATATTC
961ATACAGGAGA GAAACCCTAT GAATGTAATA AATGTGGAAA AGCCTTCTCT CGAATCACAT
1021CACTTATTGT ACATGTGAGA ATTCATACAG GTGATAAGCC TTATGAGTGT AAGGTCTGTG
1081GGAAAGCCTT CTGTCAAAGC TCATCTCTTA CTGTGCATAT GAGAAGCCAT ACAGGTGAGA
1141AACCCTATGG TTGTAATGAA TGTGGGAAAG CCTTTTCTCA GTTCTCAACC CTTGCTCTGC
1201ACATGAGAAT CCATACTGGT GAAAAACCTT ATCAGTGTAG TGAATGTGGG AAAGCTTTCA
1261GCCAAAAGTC GCATCACATT AGACACCAGA GAATTCATAC CCATTTGCCA ACTTTCTTGT
1321ACAAAGTGGT TGATATCGGT AAGCCTATCC CTAACCCTCT CCTCGGTCTC GATTCTACGT
1381AGTAATGAAC TAGTCCGTAA CTTGAAAGTA TTTCGATTTC TTGGCTTTAT ATATCTTGTG
1441GAAAGGACGA AAAGACCTTG CATTATAACT TTTCACGCGT TAAGTCgaca atcaacctct
1501ggattacaaa atttgtgaaa gatt

Download FASTA (ORF) (Full)