Construct: ORF TRCN0000491898
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF021820.2_s317c1
- DNA Barcode:
- AACTTATCTTTGGCCATGTCCTCA
- Epitope Tag:
- V5 (not translated due to prior stop codon)
- Notes:
- Has stop codon in insert
Originally Annotated References:
- Gene:
- CD36 (948)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000491898
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 948 | CD36 | CD36 molecule | NM_000072.3 | 99.9% | 100% | 573G>A |
| 2 | human | 948 | CD36 | CD36 molecule | NM_001001547.3 | 99.9% | 100% | 573G>A |
| 3 | human | 948 | CD36 | CD36 molecule | NM_001001548.2 | 99.9% | 100% | 573G>A |
| 4 | human | 948 | CD36 | CD36 molecule | NM_001127443.1 | 99.9% | 100% | 573G>A |
| 5 | human | 948 | CD36 | CD36 molecule | NM_001127444.2 | 99.9% | 100% | 573G>A |
| 6 | human | 948 | CD36 | CD36 molecule | NM_001371074.1 | 99.9% | 100% | 573G>A |
| 7 | human | 948 | CD36 | CD36 molecule | NM_001371075.1 | 99.9% | 100% | 573G>A |
| 8 | human | 948 | CD36 | CD36 molecule | NM_001371077.1 | 99.9% | 100% | 573G>A |
| 9 | human | 948 | CD36 | CD36 molecule | NM_001371078.1 | 99.9% | 100% | 573G>A |
| 10 | human | 948 | CD36 | CD36 molecule | XM_005250715.5 | 99.9% | 100% | 573G>A |
| 11 | human | 948 | CD36 | CD36 molecule | XM_024447002.1 | 99.9% | 100% | 573G>A |
| 12 | human | 948 | CD36 | CD36 molecule | XM_024447003.1 | 99.9% | 100% | 573G>A |
| 13 | human | 948 | CD36 | CD36 molecule | NM_001371079.1 | 92.7% | 92.7% | 118_119ins102;471G>A |
| 14 | human | 948 | CD36 | CD36 molecule | NM_001289908.1 | 91.6% | 91.7% | 573G>A;699_700ins117 |
| 15 | human | 948 | CD36 | CD36 molecule | NM_001289909.1 | 87.2% | 87.2% | 429_430ins180 |
| 16 | human | 948 | CD36 | CD36 molecule | NM_001289911.2 | 83.8% | 83.8% | 0_1ins228;345G>A |
| 17 | human | 948 | CD36 | CD36 molecule | NM_001371080.1 | 67% | 67.1% | 0_1ins465;108G>A |
| 18 | human | 948 | CD36 | CD36 molecule | NM_001371081.1 | 67% | 67.1% | 0_1ins465;108G>A |
| 19 | human | 948 | CD36 | CD36 molecule | NR_110501.1 | 65.5% | (many diffs) | |
| 20 | mouse | 12491 | Cd36 | CD36 antigen | NM_001159555.1 | 83.8% | 84.1% | (many diffs) |
| 21 | mouse | 12491 | Cd36 | CD36 antigen | NM_001159556.1 | 83.8% | 84.1% | (many diffs) |
| 22 | mouse | 12491 | Cd36 | CD36 antigen | NM_001159557.1 | 83.8% | 84.1% | (many diffs) |
| 23 | mouse | 12491 | Cd36 | CD36 antigen | NM_001159558.1 | 83.8% | 84.1% | (many diffs) |
| 24 | mouse | 12491 | Cd36 | CD36 antigen | NM_007643.4 | 83.8% | 84.1% | (many diffs) |
| 25 | mouse | 12491 | Cd36 | CD36 antigen | XM_006535620.3 | 83.8% | 84.1% | (many diffs) |
| 26 | mouse | 12491 | Cd36 | CD36 antigen | XM_006535621.3 | 83.8% | 84.1% | (many diffs) |
| 27 | mouse | 12491 | Cd36 | CD36 antigen | XM_006535622.3 | 83.8% | 84.1% | (many diffs) |
| 28 | mouse | 12491 | Cd36 | CD36 antigen | XM_006535623.3 | 83.8% | 84.1% | (many diffs) |
| 29 | mouse | 12491 | Cd36 | CD36 antigen | XM_006535624.3 | 83.8% | 84.1% | (many diffs) |
| 30 | mouse | 12491 | Cd36 | CD36 antigen | XM_006535625.1 | 83.8% | 84.1% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 72
- ORF end:
- 1488
- ORF length:
- 1416
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 caggcttcac catgggctgt gaccggaact gtgggctcat cgctggggct gtcattggtg 121 ctgtcctggc tgtgtttgga ggtattctaa tgccagttgg agacctgctt atccagaaga 181 caattaaaaa gcaagttgtc ctcgaagaag gtacaattgc ttttaaaaat tgggttaaaa 241 caggcacaga agtttacaga cagttttgga tctttgatgt gcaaaatcca caggaagtga 301 tgatgaacag cagcaacatt caagttaagc aaagaggtcc ttatacgtac agagttcgtt 361 ttctagccaa ggaaaatgta acccaggacg ctgaggacaa cacagtctct ttcctgcagc 421 ccaatggtgc catcttcgaa ccttcactat cagttggaac agaggctgac aacttcacag 481 ttctcaatct ggctgtggca gctgcatccc atatctatca aaatcaattt gttcaaatga 541 tcctcaattc acttattaac aagtcaaaat cttctatgtt ccaagtcaga actttgagag 601 aactgttatg gggctatagg gatccatttt tgagtttggt tccataccct gttactacca 661 cagttggtct gttttatcct tacaacaata ctgcagatgg agtttataaa gttttcaatg 721 gaaaagataa cataagtaaa gttgccataa tcgacacata taaaggtaaa aggaatctgt 781 cctattggga aagtcactgc gacatgatta atggtacaga tgcagcctca tttccacctt 841 ttgttgagaa aagccaggta ttgcagttct tttcttctga tatttgcagg tcaatctatg 901 ctgtatttga atccgacgtt aatctgaaag gaatccctgt gtatagattt gttcttccat 961 ccaaggcctt tgcctctcca gttgaaaacc cagacaacta ttgtttctgc acagaaaaaa 1021 ttatctcaaa aaattgtaca tcatatggtg tgctagacat cagcaaatgc aaagaaggga 1081 gacctgtgta catttcactt cctcattttc tgtatgcaag tcctgatgtt tcagaaccta 1141 ttgatggatt aaacccaaat gaagaagaac ataggacata cttggatatt gaacctataa 1201 ctGGATTCAC TTTACAATTT GCAAAACGGC TGCAGGTCAA CCTATTGGTC AAGCCATCAG 1261 AAAAAATTCA AGTATTAAAG AATCTGAAGA GGAACTATAT TGTGCCTATT CTTTGGCTTA 1321 ATGAGACTGG GACCATTGGT GATGAGAAGG CAAACATGTT CAGAAGTCAA GTAACTGGAA 1381 AAATAAACCT CCTTGGCCTG ATAGAAATGA TCTTACTCAG TGTTGGTGTG GTGATGTTTG 1441 TTGCTTTTAT GATTTCATAT TGTGCATGCA GATCGAAAAC AATAAAATAG AACCCAGCTT 1501 TCTTGTACAA AGTGGTTGAT ATCGGTAAGC CTATCCCTAA CCCTCTCCTC GGTCTCGATT 1561 CTACGTAGTA ATGAACTAGT CCGTAACTTG AAAGTATTTC GATTTCTTGG CTTTATATAT 1621 CTTGTGGAAA GGACGAAACT TATCTTTGGC CATGTCCTCA ACGCGTTAAG TCgacaatca 1681 acctctggat tacaaaattt gtgaaagatt