Construct: ORF TRCN0000492114
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF021167.2_s317c1
- DNA Barcode:
- GCATGGGCAACCACGCCCGGTAAA
- Epitope Tag:
- V5 (not translated due to prior stop codon)
- Notes:
- Has stop codon in insert
Originally Annotated References:
- Gene:
- GPR155 (151556)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000492114
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 151556 | GPR155 | G protein-coupled receptor 155 | NM_001033045.4 | 99.9% | 100% | 2460C>T |
| 2 | human | 151556 | GPR155 | G protein-coupled receptor 155 | NM_001267050.2 | 99.9% | 100% | 2460C>T |
| 3 | human | 151556 | GPR155 | G protein-coupled receptor 155 | NM_152529.7 | 99.9% | 100% | 2460C>T |
| 4 | human | 151556 | GPR155 | G protein-coupled receptor 155 | XM_017003485.2 | 99.9% | 100% | 2460C>T |
| 5 | human | 151556 | GPR155 | G protein-coupled receptor 155 | XM_017003486.2 | 99.9% | 100% | 2460C>T |
| 6 | human | 151556 | GPR155 | G protein-coupled receptor 155 | XM_017003487.1 | 99.9% | 100% | 2460C>T |
| 7 | human | 151556 | GPR155 | G protein-coupled receptor 155 | NM_001267051.1 | 96.7% | 96.7% | 1181_1182ins84;2376C>T |
| 8 | mouse | 68526 | Gpr155 | G protein-coupled receptor 155 | NM_001190297.2 | 85.4% | 89.8% | (many diffs) |
| 9 | mouse | 68526 | Gpr155 | G protein-coupled receptor 155 | XM_006500106.1 | 85.4% | 89.8% | (many diffs) |
| 10 | mouse | 68526 | Gpr155 | G protein-coupled receptor 155 | XM_006500104.1 | 84.2% | 88.5% | (many diffs) |
| 11 | mouse | 68526 | Gpr155 | G protein-coupled receptor 155 | XM_006500105.1 | 84.2% | 88.5% | (many diffs) |
| 12 | mouse | 68526 | Gpr155 | G protein-coupled receptor 155 | NM_001276444.1 | 82.7% | 86.8% | (many diffs) |
| 13 | mouse | 68526 | Gpr155 | G protein-coupled receptor 155 | NM_001276443.1 | 77.1% | 79.7% | (many diffs) |
| 14 | mouse | 68526 | Gpr155 | G protein-coupled receptor 155 | XM_006500107.2 | 75.9% | 78.5% | (many diffs) |
| 15 | mouse | 68526 | Gpr155 | G protein-coupled receptor 155 | XM_006500108.3 | 75.1% | 78.4% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 72
- ORF end:
- 2682
- ORF length:
- 2610
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 caggcttcac catgaattct aatttacctg cagagaactt aaccattgca gtcaatatga 121 ccaagacttt gcctacagca gtaacgcatg gatttaattc cactaatgac ccaccttcaa 181 tgtcaattac aaggcttttt ccagccttac tggaatgctt tggcattgtc ctttgtggct 241 acatagcagg aagggccaat gtcataacat caacccaggc caaaggacta ggaaattttg 301 tctccagatt tgcacttcca gctttattat tcaaaaacat ggttgtactt aatttttcca 361 atgtggactg gtccttccta tatagtatct taattgccaa agcttctgta tttttcattg 421 tatgtgtatt aaccttattg gttgccagtc ctgatagtcg atttagcaaa gctggactat 481 tccctatttt tgctacacaa agtaatgact ttgcattggg ataccctata gttgaagctt 541 tatatcaaac tacataccca gaatatctcc agtacattta tttggtggca ccaatatctc 601 ttatgatgtt aaaccctata gggtttattt tctgtgaaat ccaaaagtgg aaagacactc 661 aaaatgcttc tcaaaataaa ataaaaattg tgggactcgg actcctgcgt gtattacaga 721 acccaatagt atttatggtc ttcattggca tcgccttcaa ttttattctt gatcgaaagg 781 tacctgtata tgtcgaaaat tttcttgatg gacttggaaa ttctttttct ggatcagccc 841 tattttatct tggtctcacg atggtgggaa aaataaagag actgaagaag tcggcatttg 901 tagtactaat tcttctcatc acagctaaac ttctggtgct gccacttctg tgcagagaaa 961 tggtggaact cttggacaag ggcgacagtg tggtgaacca tacaagttta tcaaattatg 1021 catttctgta tggtgtattt cctgtagcac caggagtggc tatctttgca acacaattca 1081 acatggaagt agaaattata acctcaggga tggtgataag cacatttgtg tctgctccca 1141 tcatgtacgt ttctgcctgg ttactgacct ttcccactat ggaccctaag ccattggcat 1201 atgccatcca gaatgttagt tttgatataa gtattgtcag cctgatctcc ttgatctggt 1261 ctctggctat tcttcttttg agtaagaaat ataaacagct tcctcatatg cttacaacta 1321 atttactcat tgctcagtct attgtctgtg ctggaatgat gatatggaat tttgttaaag 1381 aaaaaaattt tgttggacaa attttggtgt ttgttctatt gtacagctcc ctctatagca 1441 cctacctgtg gacaggcctt ctagcaattt ctttgtttct tttgaaaaag cgagagaggg 1501 tacaaattcc tgttggaata atcataatat ctggctgggg aattcctgct ctccttgttg 1561 gtgttctttt gataactgga aaacacaatg gagatagcat tgactcagcc ttcttttatg 1621 gaaaagaaca gatgatcacc acagcagtca ccctgttctg cagcatcctg atagctggca 1681 tatccctcat gtgcatgaac cagactgccc aagcaggaag ctatgaaggt ttcgatcagt 1741 ctcagagcca caaagtggtg gagcctggaa atactgcttt tgaggagagt ccagcaccag 1801 taaatgaacc agaacttttt acaagctcta ttccagaaac aagttgctgc tcctgctcca 1861 tgggaaatgg tgaattacac tgcccatcaa tagagccaat agcaaacaca agcaccagtg 1921 agcctgtgat tccttcgttt gagaaaaaca atcattgtgt gagtcgctgt aactcccaga 1981 gctgcatatt agcccaggaa gaagaacagt atctacagag tggagaccag caactgaccc 2041 gacatgtgtt gctgtgttta cttctcatca ttggcctgtt cgctaatctt tccagttgtt 2101 tatggtggct attcaaccaa gagcctggaa gactttatgt tgagttacag tttttctgtg 2161 ccgtgtttaa ctttggtcag ggatttattt cctttggaat ctttggatta gataaacatt 2221 taatcatcct gcctttcaaa agaagacttg aattcctatg gaacaataaa gacacagcag 2281 aaaacaggga ttcTCCTGTT TCAGAGGAAA TAAAAATGAC CTGTCAACAA TTTATCCATT 2341 ATCACCGTGA CCTCTGTATC CGAAACATTG TCAAAGAAAG AAGGTGTGGT GCAAAGACTT 2401 CTGCTGGAAC TTTCTGTGGC TGTGACCTGG TGAGCTGGCT AATTGAAGTC GGCCTTGCCT 2461 CCGACCGTGG TGAAGCTGTG ATATACGGAG ACAGGCTGGT ACAAGGGGGA GTCATCCAAC 2521 ATATTACCAA TGAGTATGAA TTCCGGGATG AGTACTTGTT TTACAGATTT CTTCAAAAGA 2581 GTCCTGAACA GAGTCCTCCT GCTATTAATG CAAACACTCT CCAACAGGAA AGATATAAAG 2641 AAATTGAGCA TTCATCCCCA CCCTCACATT CCCCTAAGAC CTAAGACCCA GCTTTCTTGT 2701 ACAAAGTGGT TGATATCGGT AAGCCTATCC CTAACCCTCT CCTCGGTCTC GATTCTACGT 2761 AGTAATGAAC TAGTCCGTAA CTTGAAAGTA TTTCGATTTC TTGGCTTTAT ATATCTTGTG 2821 GAAAGGACGA GCATGGGCAA CCACGCCCGG TAAAACGCGT TAAGTCgaca atcaacctct 2881 ggattacaaa atttgtgaaa gatt