Construct: ORF TRCN0000492180

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF021273.2_s317c1
DNA Barcode:
GAGCGTTCAAATGCTATAAACGGT
Epitope Tag:
V5 (not translated due to prior stop codon)
Notes:
Has stop codon in insert

Originally Annotated References:

Gene:
RARG (5916)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000492180
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 5916 RARG retinoic acid receptor gamma NM_000966.6 99.9% 100% 849G>A
2 human 5916 RARG retinoic acid receptor gamma XM_024449113.1 99.9% 100% 849G>A
3 human 5916 RARG retinoic acid receptor gamma NM_001042728.3 91.1% 88.7% (many diffs)
4 human 5916 RARG retinoic acid receptor gamma NM_001243730.1 84% 84.1% 0_1ins216;633G>A
5 human 5916 RARG retinoic acid receptor gamma XM_024449114.1 84% 84.1% 0_1ins216;633G>A
6 human 5916 RARG retinoic acid receptor gamma XM_024449112.1 83.8% 83.9% 1_261del;1110G>A
7 human 5916 RARG retinoic acid receptor gamma NM_001243732.2 82.6% 77.8% (many diffs)
8 human 5916 RARG retinoic acid receptor gamma NM_001243731.2 73.2% 73.3% 0_1ins363;486G>A
9 mouse 19411 Rarg retinoic acid receptor, gamma NM_011244.4 88.8% 97.1% (many diffs)
10 mouse 19411 Rarg retinoic acid receptor, gamma XM_006520650.1 88.8% 97.1% (many diffs)
11 mouse 19411 Rarg retinoic acid receptor, gamma XM_011245525.2 88.8% 97.1% (many diffs)
12 mouse 19411 Rarg retinoic acid receptor, gamma NM_001042727.2 81.8% 85.8% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
72
ORF end:
1434
ORF length:
1362
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61caggcttcac catggccacc aataaggagc gactctttgc ggctggtgcc ctggggcctg
121gatctggcta cccaggggca ggtttcccct tcgccttccc aggggcactc agggggtctc
181cgcctttcga gatgctgagc cctagcttcc ggggcctggg ccagcctgac ctccccaagg
241agatggcctc tctgtcggtg gagacacaga gcaccagctc agaggagatg gtgcccagct
301cgccctcgcc ccctccgcct cctcgggtct acaagccatg cttcgtgtgc aatgacaagt
361cctctggcta ccactatggg gtcagctctt gtgaaggctg caagggcttc tttcgccgaa
421gcatccagaa gaacatggtg tacacgtgtc accgcgacaa aaactgtatc atcaacaagg
481tgaccaggaa tcgctgccag tactgccggc tacagaagtg cttcgaagtg ggcatgtcca
541aggaagctgt gcgaaatgac cggaacaaga agaagaaaga ggtgaaggaa gaagggtcac
601ctgacagcta tgagctgagc cctcagttag aagagctcat caccaaggtc agcaaagccc
661atcaggagac tttcccctcg ctctgccagc tgggcaagta taccacgaac tccagtgcag
721accaccgcgt gcagctggat ctggggctgt gggacaagtt cagtgagctg gctaccaagt
781gcatcatcaa gatcgtggag tttgccaagc ggttgcctgg ctttacaggg ctcagcattg
841ctgaccagat cactctgctc aaagctgcct gcctagatat cctgatgctg cgtatctgca
901caaggtacac cccagagcaa gacaccatga ccttctccga cgggctgacc ctgaaccgga
961cccagatgca caatgccggc ttcgggcccc tcacagacct tgtctttgcc tttgctgggc
1021agctcctgcc cctggagatg gatgacaccg agacagggct gctcagcgcc atctgcctca
1081TCTGCGGAGA CCGCATGGAC CTGGAGGAGC CCGAAAAAGT GGACAAGCTG CAGGAGCCAC
1141TGCTGGAAGC CCTGAGGCTG TACGCCCGGC GCCGGCGGCC CAGCCAGCCC TACATGTTCC
1201CAAGGATGCT AATGAAAATC ACCGACCTCC GGGGCATCAG CACTAAGGGA GCTGAAAGGG
1261CCATTACTCT GAAGATGGAG ATTCCAGGCC CGATGCCTCC CTTAATCCGA GAGATGCTGG
1321AGAACCCTGA AATGTTTGAG GATGACTCCT CGCAGCCTGG TCCCCACCCC AATGCCTCTA
1381GCGAGGATGA GGTTCCTGGG GGCCAGGGCA AAGGGGGCCT GAAGTCCCCA GCCTAGAACC
1441CAGCTTTCTT GTACAAAGTG GTTGATATCG GTAAGCCTAT CCCTAACCCT CTCCTCGGTC
1501TCGATTCTAC GTAGTAATGA ACTAGTCCGT AACTTGAAAG TATTTCGATT TCTTGGCTTT
1561ATATATCTTG TGGAAAGGAC GAGAGCGTTC AAATGCTATA AACGGTACGC GTTAAGTCga
1621caatcaacct ctggattaca aaatttgtga aagatt

Download FASTA (ORF) (Full)

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