Construct: ORF TRCN0000492258

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF000492.1_s317c1
Derived from:
ccsbBroadEn_15679
DNA Barcode:
ATCCCCAGCCGATTGCACGGGCTG
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
DHX38 (9785)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000492258
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 9785 DHX38 DEAH-box helicase 38 NM_014003.4 100% 100%
2 human 9785 DHX38 DEAH-box helicase 38 XM_011523484.2 100% 100%
3 human 9785 DHX38 DEAH-box helicase 38 XM_011523485.1 100% 100%
4 human 9785 DHX38 DEAH-box helicase 38 XM_005256269.2 97.1% 97.1% 509_510ins105
5 human 9785 DHX38 DEAH-box helicase 38 XM_017023913.2 97.1% 97.1% 509_510ins105
6 human 9785 DHX38 DEAH-box helicase 38 XR_429741.3 85.8% 1_176del;2760_2761insCAGGTCAGTGTTT;3845_4262del
7 mouse 64340 Dhx38 DEAH (Asp-Glu-Ala-His) box ... XM_006531261.3 90.2% 97.3% (many diffs)
8 mouse 64340 Dhx38 DEAH (Asp-Glu-Ala-His) box ... NM_178380.2 90.1% 97.2% (many diffs)
9 mouse 64340 Dhx38 DEAH (Asp-Glu-Ala-His) box ... NR_151644.1 73.9% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
3747
ORF length:
3681
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatggg ggacaccagt gaggatgcct cgatccatcg attggaaggc actgatctgg
121actgtcaggt tggtggtctt atttgcaagt ccaaaagtgc ggccagcgag cagcatgtct
181tcaaggctcc tgctccccgc ccttcattac tcggactgga cttgctggct tccctgaaac
241ggagagagcg agaggagaag gacgatgggg aggacaagaa gaagtccaaa gtctcctcct
301acaaggactg ggaagagagc aaggatgacc agaaggatgc tgaggaagag ggcggtgacc
361aggctggcca aaatatccgg aaagacagac attatcggtc tgctcgggta gagactccat
421cccatccggg tggtgtgagc gaagagtttt gggaacgcag tcggcagaga gagcgggagc
481ggcgggaaca tggtgtctat gcctcgtcca aagaagaaaa ggattggaag aaggagaaat
541cgcgggatcg agactatgac cgcaagaggg acagagatga gcgggataga agtaggcaca
601gcagcagatc agagcgagat ggagggtcag agcgtagcag cagaagaaat gaacccgaga
661gcccacgaca tcgacctaaa gatgcagcca ccccttcaag gtctacctgg gaggaagagg
721acagtggcta tggctcctca aggcgctcac agtgggaatc gccctccccg acgccttcct
781atcgggattc tgagcggagc catcggctgt ccactcgaga tcgagacagg tctgtgaggg
841gcaagtactc ggatgacacg cctctgccaa ctccctccta caaatataac gagtgggccg
901atgacagaag acacttgggg tccaccccgc gtctgtccag gggccgagga agacgtgagg
961agggcgaaga aggaatttca tttgacacgg aggaggagcg gcagcagtgg gaagatgacc
1021agaggcaagc cgatcgggat tggtacatga tggacgaggg ctatgacgag ttccacaacc
1081cgctggccta ctcctccgag gactacgtga ggaggcggga gcagcacctg cataaacaga
1141agcagaagcg catttcagct cagcggagac agatcaatga ggataacgag cgctgggaga
1201caaaccgcat gctcaccagt ggggtggtcc atcggctgga ggtggatgag gactttgaag
1261aggacaacgc ggccaaggtg catctgatgg tgcacaatct ggtgcctccc tttctggatg
1321ggcgcattgt cttcaccaag cagccggagc cggtgattcc agtgaaggat gctacttctg
1381acctggccat cattgctcgg aaaggcagcc agacagtgcg gaagcacagg gagcagaagg
1441agcgcaagaa ggctcagcac aaacactggg aactggcggg gaccaaactg ggagatataa
1501tgggcgtcaa gaaggaggaa gagccagata aagctgtgac ggaggatggg aaggtggact
1561acaggacaga gcagaagttt gcagatcaca tgaagagaaa gagcgaagcc agcagtgaat
1621ttgcaaagaa gaagtccatc ctggagcaga ggcagtacct gcccatcttt gcagtgcagc
1681aggagctgct cactattatc agagacaaca gcatcgtgat cgtggttggg gagacgggga
1741gtggtaagac cactcagctg acgcagtacc tgcatgaaga tggttacacg gactatggga
1801tgattgggtg tacccagccc cggcgtgtag ctgccatgtc agtggccaag agagtcagtg
1861aagagatggg gggaaacctt ggcgaggagg tgggctatgc catccgcttt gaagactgca
1921cttcagagaa caccttgatc aaatacatga ctgacgggat cctgctccga gagtccctcc
1981gggaagccga cctggatcac tacagtgcca tcatcatgga cgaggcccac gagcgctccc
2041tcaacactga cgtgctcttt gggctgctcc gggaggtagt ggctcggcgc tcagacctga
2101agctcatcgt cacatcagcc acgatggatg cggagaagtt tgctgccttt tttgggaatg
2161tccccatctt ccacatccct ggccgtacct tccctgttga catcctcttc agcaagaccc
2221cacaggagga ttacgtggag gctgcagtga agcagtcctt gcaggtgcac ctgtcggggg
2281cccctggaga catccttatc ttcatgcctg gccaagagga cattgaggtg acctcagacc
2341agattgtgga gcatctggag gaactggaga acgcgcctgc cctggctgtg ctgcccatct
2401actctcagct gccttctgac ctccaggcca aaatcttcca gaaggctcca gatggcgttc
2461ggaagtgcat cgttgccacc aatattgccg agacgtctct cactgttgac ggcatcatgt
2521ttgttatcga ttctggttat tgcaaattaa aggtcttcaa ccccaggatt ggcatggatg
2581ctctgcagat ctatcccatt agccaggcca atgccaacca gcggtcaggg cgagccggca
2641ggacgggccc aggtcagtgt ttcaggctct acacccagag cgcctacaag aatgagctcc
2701tgaccaccac agtgcccgag atccagagga ctaacctggc caacgtggtg ctgctgctca
2761agtccctcgg ggtgcaggac ctgctgcagt tccacttcat ggacccgccc ccggaggaca
2821acatgctcaa ctctatgtat cagctctgga tcctcggggc cctggacaac acaggtggtc
2881tgacctctac cgggcggctg atggtggagt tcccgctgga ccctgccctg tccaagatgc
2941tcatcgtgtc ctgtgacatg ggctgcagct ccgagatcct gctcatcgtt tccatgctct
3001cggtcccagc catcttctac aggcccaagg gtcgagagga ggagagtgat caaatccggg
3061agaagttcgc tgttcctgag agcgatcatt tgacctacct gaatgtttac ctgcagtgga
3121agaacaataa ttactccacc atctggtgta acgatcattt catccatgct aaggccatgc
3181ggaaggtccg ggaggtgcga gctcaactca aggacatcat ggtgcagcag cggatgagcc
3241tggcctcgtg tggcactgac tgggacatcg tcaggaagtg catctgtgct gcctatttcc
3301accaagcagc caagctcaag ggaatcgggg agtacgtgaa catccgcaca gggatgcccT
3361GCCACTTGCA CCCCACCAGC TCCCTTTTTG GAATGGGCTA CACCCCAGAT TACATAGTGT
3421ATCACGAGTT GGTCATGACC ACCAAGGAGT ATATGCAGTG TGTGACCGCT GTGGACGGGG
3481AGTGGCTGGC GGAGCTGGGC CCCATGTTCT ATAGCGTGAA ACAGGCGGGC AAGTCACGGC
3541AGGAGAACCG TCGTCGGGCC AAAGAGGAAG CCTCTGCCAT GGAGGAGGAG ATGGCGCTGG
3601CCGAGGAGCA GCTGCGAGCC CGGCGGCAGG AGCAGGAGAA GCGCAGCCCC CTGGGCAGTG
3661TCAGGTCTAC GAAGATCTAC ACTCCAGGCC GGAAAGAGCA AGGGGAGCCC ATGACCCCTC
3721GCCGCACGCC AGCCCGCTTT GGTCTGTGCC CAACTTTCTT GTACAAAGTG GTTGATATCG
3781GTAAGCCTAT CCCTAACCCT CTCCTCGGTC TCGATTCTAC GTAGTAATGA ACTAGTCCGT
3841AACTTGAAAG TATTTCGATT TCTTGGCTTT ATATATCTTG TGGAAAGGAC GAATCCCCAG
3901CCGATTGCAC GGGCTGACGC GTTAAGTCga caatcaacct ctggattaca aaatttgtga
3961aagatt

Download FASTA (ORF) (Full)