Transcript: Human XM_005256269.2

PREDICTED: Homo sapiens DEAH-box helicase 38 (DHX38), transcript variant X3, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
DHX38 (9785)
Length:
4170
CDS:
177..3755

Additional Resources:

NCBI RefSeq record:
XM_005256269.2
NBCI Gene record:
DHX38 (9785)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_005256269.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000272834 GGACCAAACTGGGAGATATAA pLKO_005 1486 CDS 100% 15.000 21.000 N DHX38 n/a
2 TRCN0000314555 GCATCGTTGCCACCAATATTG pLKO_005 2473 CDS 100% 13.200 10.560 N DHX38 n/a
3 TRCN0000001171 GCAGTGGAAGAACAATAATTA pLKO.1 3119 CDS 100% 15.000 10.500 N DHX38 n/a
4 TRCN0000001173 GTCAGGTTGGTGGTCTTATTT pLKO.1 235 CDS 100% 15.000 10.500 N DHX38 n/a
5 TRCN0000001172 GAAGATGGTTACACGGACTAT pLKO.1 1782 CDS 100% 4.950 3.465 N DHX38 n/a
6 TRCN0000272782 GAAGATGGTTACACGGACTAT pLKO_005 1782 CDS 100% 4.950 3.465 N DHX38 n/a
7 TRCN0000001170 GAGGACTTTCATCTGTGCATA pLKO.1 3848 3UTR 100% 4.950 3.465 N DHX38 n/a
8 TRCN0000272783 GAGGACTTTCATCTGTGCATA pLKO_005 3848 3UTR 100% 4.950 3.465 N DHX38 n/a
9 TRCN0000113028 GCAGAAGTTTGCAGATCACAT pLKO.1 1577 CDS 100% 4.950 3.465 N Dhx38 n/a
10 TRCN0000326423 GCAGAAGTTTGCAGATCACAT pLKO_005 1577 CDS 100% 4.950 3.465 N Dhx38 n/a
11 TRCN0000001174 CAGAGACAACAGCATCGTGAT pLKO.1 1706 CDS 100% 4.050 2.835 N DHX38 n/a
12 TRCN0000272784 CAGAGACAACAGCATCGTGAT pLKO_005 1706 CDS 100% 4.050 2.835 N DHX38 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_005256269.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_15679 pDONR223 0% 97.1% 97.1% None 509_510ins105 n/a
2 ccsbBroad304_15679 pLX_304 0% 97.1% 97.1% V5 509_510ins105 n/a
3 TRCN0000492258 ATCCCCAGCCGATTGCACGGGCTG pLX_317 10.7% 97.1% 97.1% V5 509_510ins105 n/a
4 ccsbBroadEn_07485 pDONR223 100% 97% 97.1% None (many diffs) n/a
5 ccsbBroad304_07485 pLX_304 0% 97% 97.1% V5 (many diffs) n/a
6 TRCN0000479041 ACCTAATGTTGCCAACGGAGTGTC pLX_317 10.7% 97% 97.1% V5 (many diffs) n/a
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