Transcript: Mouse NR_151644.1

Mus musculus DEAH (Asp-Glu-Ala-His) box polypeptide 38 (Dhx38), transcript variant 2, non-coding RNA.

Source:
NCBI, updated 2018-06-03
Taxon:
Mus musculus (mouse)
Gene:
Dhx38 (64340)
Length:
4462
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
NR_151644.1
NBCI Gene record:
Dhx38 (64340)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NR_151644.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000311484 CGGGATCGAGACAGGTCTATA pLKO_005 1142 3UTR 100% 13.200 18.480 N Dhx38 n/a
2 TRCN0000113029 GCCGGATAAAGCTATGACAGA pLKO.1 1849 3UTR 100% 2.640 3.696 N Dhx38 n/a
3 TRCN0000326348 GCCGGATAAAGCTATGACAGA pLKO_005 1849 3UTR 100% 2.640 3.696 N Dhx38 n/a
4 TRCN0000113027 CCGGATAAAGCTATGACAGAA pLKO.1 1850 3UTR 100% 4.950 3.960 N Dhx38 n/a
5 TRCN0000113026 GCAGTGGAAGAACAACAATTA pLKO.1 3426 3UTR 100% 13.200 9.240 N Dhx38 n/a
6 TRCN0000326490 GCAGTGGAAGAACAACAATTA pLKO_005 3426 3UTR 100% 13.200 9.240 N Dhx38 n/a
7 TRCN0000306248 AGGATGGTGGCCACGTACTAA pLKO_005 4082 3UTR 100% 5.625 3.938 N Dhx38 n/a
8 TRCN0000001172 GAAGATGGTTACACGGACTAT pLKO.1 2102 3UTR 100% 4.950 3.465 N DHX38 n/a
9 TRCN0000272782 GAAGATGGTTACACGGACTAT pLKO_005 2102 3UTR 100% 4.950 3.465 N DHX38 n/a
10 TRCN0000113028 GCAGAAGTTTGCAGATCACAT pLKO.1 1897 3UTR 100% 4.950 3.465 N Dhx38 n/a
11 TRCN0000326423 GCAGAAGTTTGCAGATCACAT pLKO_005 1897 3UTR 100% 4.950 3.465 N Dhx38 n/a
12 TRCN0000113025 GCGTGTTCATCTGTGGGTCAT pLKO.1 4159 3UTR 100% 4.050 2.835 N Dhx38 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NR_151644.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_07485 pDONR223 100% 73.9% None (many diffs) n/a
2 ccsbBroad304_07485 pLX_304 0% 73.9% V5 (many diffs) n/a
3 TRCN0000479041 ACCTAATGTTGCCAACGGAGTGTC pLX_317 10.7% 73.9% V5 (many diffs) n/a
4 ccsbBroadEn_15679 pDONR223 0% 73.9% None (many diffs) n/a
5 ccsbBroad304_15679 pLX_304 0% 73.9% V5 (many diffs) n/a
6 TRCN0000492258 ATCCCCAGCCGATTGCACGGGCTG pLX_317 10.7% 73.9% V5 (many diffs) n/a
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