Construct: ORF TRCN0000492291

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF011986.1_s317c1
Derived from:
ccsbBroadEn_13732
DNA Barcode:
GCGTAGATGATAAGAAGTTGGTAC
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
FAM153CP (653316)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000492291
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 285596 FAM153A family with sequence simila... XM_011534528.2 56% 55.6% (many diffs)
2 human 202134 FAM153B family with sequence simila... NM_001265615.1 46.2% 45.8% (many diffs)
3 human 285596 FAM153A family with sequence simila... NM_173663.4 46.1% 45.8% (many diffs)
4 human 285596 FAM153A family with sequence simila... XM_006714848.3 46.1% 45.8% (many diffs)
5 human 285596 FAM153A family with sequence simila... XM_006714849.3 46.1% 45.8% (many diffs)
6 human 285596 FAM153A family with sequence simila... XM_011534521.3 46.1% 45.8% (many diffs)
7 human 285596 FAM153A family with sequence simila... XM_011534522.2 46.1% 45.8% (many diffs)
8 human 285596 FAM153A family with sequence simila... XM_011534523.2 46.1% 45.8% (many diffs)
9 human 285596 FAM153A family with sequence simila... XM_017009366.1 46.1% 45.8% (many diffs)
10 human 285596 FAM153A family with sequence simila... XM_017009367.1 46.1% 45.8% (many diffs)
11 human 285596 FAM153A family with sequence simila... XM_017009369.1 46.1% 45.8% (many diffs)
12 human 285596 FAM153A family with sequence simila... XM_017009370.1 46.1% 45.8% (many diffs)
13 human 285596 FAM153A family with sequence simila... XM_017009365.1 43% 42.7% (many diffs)
14 human 285596 FAM153A family with sequence simila... XM_017009363.1 42.8% 42.5% (many diffs)
15 human 285596 FAM153A family with sequence simila... XM_017009364.1 42.8% 42.5% (many diffs)
16 human 285596 FAM153A family with sequence simila... XM_017009362.1 42.1% 41.8% (many diffs)
17 human 285596 FAM153A family with sequence simila... XM_011534520.2 37.1% 36.8% (many diffs)
18 human 285596 FAM153A family with sequence simila... XM_005265889.3 36.9% 36.6% (many diffs)
19 human 285596 FAM153A family with sequence simila... XM_017009352.1 36.9% 36.6% (many diffs)
20 human 285596 FAM153A family with sequence simila... XM_017009353.1 36.9% 36.6% (many diffs)
21 human 285596 FAM153A family with sequence simila... XM_017009354.1 36.9% 36.6% (many diffs)
22 human 285596 FAM153A family with sequence simila... XM_017009355.1 36.9% 36.6% (many diffs)
23 human 285596 FAM153A family with sequence simila... XM_017009356.1 36.9% 36.6% (many diffs)
24 human 285596 FAM153A family with sequence simila... XM_017009357.1 36.9% 36.6% (many diffs)
25 human 285596 FAM153A family with sequence simila... XM_017009358.1 36.9% 36.6% (many diffs)
26 human 285596 FAM153A family with sequence simila... XM_017009359.1 36.9% 36.6% (many diffs)
27 human 285596 FAM153A family with sequence simila... XM_017009360.1 36.9% 36.6% (many diffs)
28 human 285596 FAM153A family with sequence simila... XM_017009361.1 36.9% 36.6% (many diffs)
29 human 653316 FAM153CP family with sequence simila... NR_159407.1 35.7% 1_241del;674_1210del
30 human 653316 FAM153CP family with sequence simila... NR_149722.1 16.9% 1_555del;988_2552del
31 human 285596 FAM153A family with sequence simila... NR_146227.1 9.1% (many diffs)
32 human 285596 FAM153A family with sequence simila... NR_146226.1 8.8% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
501
ORF length:
432
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcaccat ggtggacaaa gacacagaga gagacattga gatgaaacgg caacTACGGC
121GACTACGGGA GCTCCACCTA TACAGCACAT GGAAGAAGTA CCAAGAGGCG ATGAAGACAT
181CCTTGGGAGT TCCACAACGT GGTGACCTGG AAGACCTGGA GGAGCATCTG CCAGGGCAGA
241CAGTCTCTGA GGAAGCCACA GGGGTTCACA TGATGCAGGT GGACCCAGCC ACACCGGCAA
301AGAAATTGGA AGACTCCACC ATTACAGGCA GCCACCAGCA GATGTCAGCA AGTCCTTCCT
361CTGCACCTGC AGAAGAAGCA ACAGAAAAGA CCAAAGTGGA AGAGGAAGTG AAAACCAGAA
421AGCCCAAGAA GAAAACCAGG AAGCCCAGCA AGAAAAGCCG GTGGAATGTC CTGAAATGTT
481GGGACATTTT TAATATATTT TTGCCAACTT TCTTGTACAA AGTGGTTGAT ATCGGTAAGC
541CTATCCCTAA CCCTCTCCTC GGTCTCGATT CTACGTAGTA ATGAACTAGT CCGTAACTTG
601AAAGTATTTC GATTTCTTGG CTTTATATAT CTTGTGGAAA GGACGAGCGT AGATGATAAG
661AAGTTGGTAC ACGCGTTAAG TCgacaatca acctctggat tacaaaattt gtgaaagatt

Download FASTA (ORF) (Full)