Construct: ORF TRCN0000492349

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF006600.1_s317c1
Derived from:
ccsbBroadEn_14027
DNA Barcode:
GGGCCCACGGTCCAATCTCCTTTG
Epitope Tag:
V5 (not translated due to prior stop codon)
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
JADE3 (9767)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000492349
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 9767 JADE3 jade family PHD finger 3 NM_001077445.2 99.9% 99.1% 2449_2450insC
2 human 9767 JADE3 jade family PHD finger 3 NM_014735.5 99.9% 99.1% 2449_2450insC
3 mouse 382207 Jade3 jade family PHD finger 3 NM_199317.2 84.6% 81% (many diffs)
4 mouse 382207 Jade3 jade family PHD finger 3 XM_011247476.1 82% 78.6% (many diffs)
5 mouse 382207 Jade3 jade family PHD finger 3 XM_011247477.1 82% 78.6% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
2541
ORF length:
2472
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcaccat gaaacgccat aggcctgtca gcagcagtga cagttcagac gaaagtcctt
121ccacttcctt tacttctggc tcaatgtata ggatcaagtc aaaaattcca aatgaacaca
181agaaacctgc tgaggtattc cggaaggacc tcatcagtgc catgaaactt ccagattctc
241accacattaa tcctgatagc tattacctct ttgctgatac atggaaggaa gaatgggaaa
301agggagtcca ggtaccagcc agtccagaca ccgttccaca gccttctctc aggattatag
361ctgagaaggt aaaggacgtt ctgtttatcc gaccccggaa gtatattcac tgctccagcc
421cagacaccac agagcctggc tacatcaaca tcatggagtt ggcagcatct gtttgccgct
481atgacctaga tgacatggac atcttctggc ttcaggaact caatgaagac cttgcagaaa
541tgggttgtgg gccagttgat gagaatctta tggaaaagac agtagaagtc ctggaacgcc
601attgccatga aaatatgaac catgctattg agacagagga agggctaggc atagagtatg
661atgaagatgt gatctgtgat gtgtgccggt ctccagacag tgaagaaggg aatgatatgg
721tgttctgtga taagtgtaac gtctgtgtgc atcaggcctg ctatggcatc ctcaaggtcc
781cagaaggcag ctggctgtgt cgctcctgtg tcctgggcat ttatccgcaa tgtgtgttat
841gtccaaagaa aggtggagcc ctgaagacca ccaagacagg gactaaatgg gctcatgtca
901gctgtgccct gtggatccca gaggtcagca ttgcttgtcc tgagaggatg gaaccgatca
961cgaagatctc ccacatccca cccagtcggt gggccttagt ctgcaacttg tgcaagttga
1021agacgggggc ttgtattcag tgctctataa aaagctgcat cactgccttc cacgtcacct
1081gtgcctttga gcacggccta gagatgaaga ccatcctaga tgagggagac gaagtgaagt
1141tcaagtcata ttgcctcaag catagccaaa acaggcagaa acttggagaa gctgagtacc
1201cccaccacag ggctaaagag cagagccagg ccaaaagtga gaaaaccagc ctgcgggcac
1261agaagcttcg ggagctggag gaggagttct attccttggt acgagtggaa gatgtggccg
1321cagagctggg tatgcccacg ctagctgtgg actttatcta taactactgg aaactgaagc
1381ggaaaagtaa cttcaataag ccattatttc ctccaaagga ggatgaagaa aatgggctgg
1441tgcagccaaa agaggaaagc attcacactc gaatgagaat gtttatgcat ctacgccagg
1501acctggagag ggtccgaaat ctgtgctata tgataagcag acgagagaag ctgaagctgt
1561cacacaacaa aatacaggaa cagatcttcg gtttgcaagt ccagcttctt aaccaagaaa
1621ttgatgcagg gcttcctttg acaaatgcac ttgaaaactc actgttttac ccaccaccaa
1681gaattacctt gaagttaaaa atgcccaaat caaccccaga agaccacaga aacagctcca
1741cagaaaccga tcagcagccc cactctcctg acagcagctc atctgttcac agtataagga
1801acatgcaggt gcctcaggag tcactagaaa tgagaacaaa atcgtatccg agatacccac
1861tagagagcaa gaataaccgt ttgctggcca gtctcagcca ttctaggagt gaagcaaagg
1921agtccagtcc tgcttggaga accccgtcct cggagtgcta tcatgggcag tcactgggaa
1981agcctctggt ccttcaggct gccctccatg gacagtcttc cattgggaat gggaaaagtc
2041agcctaactc caagtttgcc aaatccaatg gcctggaggg cagctggtct gggaatgtca
2101cccaaaaaga cagctcgagt gagatgttct gtgaccagga gcctgtgttc agcccccact
2161tggtcagtca gggcagcttt agaaaatcca ctgtagaaca ctttagtagg TCCTTTAAAG
2221AGACCACCAA TAGGTGGGTG AAGAACACAG AGGACCTCCA GTGCTATGTG AAGCCAACCA
2281AGAATATGAG CCCCAAGGAG CAGTTCTGGG GTAGACAGGT TCTCAGGCGG TCTGCAGGGA
2341GAGCTCCATA TCAGGAAAAT GATGGCTATT GCCCAGATTT GGAGCTGAGT GATTCAGAGG
2401CAGAAAGTGA TGGGAATAAA GAAAAAGTCA GGGTAAGGAA AGATAGCTCA GACAGGGAAA
2461ATCCTCCCCA TGACTCTAGA CGGGATTGCC ATGGTAAAAG CAAGACACAT CCCCTTTCCC
2521CACAGTTCAA TGCAAAGGTT GCCAACTTTC TTGTACAAAG TGGTTGATAT CGGTAAGCCT
2581ATCCCTAACC CTCTCCTCGG TCTCGATTCT ACGTAGTAAT GAACTAGTCC GTAACTTGAA
2641AGTATTTCGA TTTCTTGGCT TTATATATCT TGTGGAAAGG ACGAGGGCCC ACGGTCCAAT
2701CTCCTTTGAC GCGTTAAGTC gacaatcaac ctctggatta caaaatttgt gaaagatt

Download FASTA (ORF) (Full)