Construct: ORF ccsbBroad304_00140
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF008387.1_s304c1, BRDN0000399176
- Derived from:
- ccsbBroadEn_00140
- DNA Barcode:
- None
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ATP6V0A1 (535)
Vector Information:
- Vector Backbone:
- pLX_304
- Pol II Cassette 1:
- PGK-BlastR
- Pol II Cassette 2:
- CMV-ccsbBroad304_00140
- Selection Marker:
- BlastR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 535 | ATP6V0A1 | ATPase H+ transporting V0 s... | NM_001130021.2 | 100% | 100% | |
| 2 | human | 535 | ATP6V0A1 | ATPase H+ transporting V0 s... | NM_005177.4 | 99.2% | 99.2% | 2111_2112insGCCTTCCGAGGACGAAGT |
| 3 | human | 535 | ATP6V0A1 | ATPase H+ transporting V0 s... | XM_005257459.2 | 99.1% | 99.1% | 422_442del |
| 4 | human | 535 | ATP6V0A1 | ATPase H+ transporting V0 s... | NM_001130020.2 | 98.4% | 98.4% | 422_442del;2132_2133insGCCTTCCGAGGACGAAGT |
| 5 | human | 535 | ATP6V0A1 | ATPase H+ transporting V0 s... | XM_017024769.1 | 94.9% | 94.9% | 2002_2003ins126 |
| 6 | human | 535 | ATP6V0A1 | ATPase H+ transporting V0 s... | XM_011524908.2 | 94.1% | 94.1% | 422_442del;2023_2024ins126 |
| 7 | human | 535 | ATP6V0A1 | ATPase H+ transporting V0 s... | XM_017024770.1 | 92.7% | 88.6% | 2248_2249ins172;2340_2349delTGAGTCCCTG |
| 8 | human | 535 | ATP6V0A1 | ATPase H+ transporting V0 s... | XM_017024771.1 | 92% | 87.8% | 2111_2112insGCCTTCCGAGGACGAAGT;2230_2231ins172;2322_2331delTGAGTCCCTG |
| 9 | human | 535 | ATP6V0A1 | ATPase H+ transporting V0 s... | XM_005257461.2 | 92% | 87.8% | 422_442del;2269_2270ins172;2361_2370delTGAGTCCCTG |
| 10 | human | 535 | ATP6V0A1 | ATPase H+ transporting V0 s... | XM_005257463.3 | 91.3% | 87.1% | (many diffs) |
| 11 | human | 535 | ATP6V0A1 | ATPase H+ transporting V0 s... | XM_017024772.2 | 69.4% | 69.4% | 0_1ins768 |
| 12 | human | 535 | ATP6V0A1 | ATPase H+ transporting V0 s... | XM_017024773.2 | 69.4% | 69.4% | 0_1ins768 |
| 13 | human | 535 | ATP6V0A1 | ATPase H+ transporting V0 s... | XM_017024774.2 | 68.6% | 68.6% | 0_1ins768;1343_1344insGCCTTCCGAGGACGAAGT |
| 14 | human | 535 | ATP6V0A1 | ATPase H+ transporting V0 s... | XR_934484.3 | 64.7% | (many diffs) | |
| 15 | human | 535 | ATP6V0A1 | ATPase H+ transporting V0 s... | XR_001752539.1 | 64.3% | 1_133del;2553_2730del;2823_3904del | |
| 16 | human | 535 | ATP6V0A1 | ATPase H+ transporting V0 s... | XR_934483.3 | 63.9% | (many diffs) | |
| 17 | human | 535 | ATP6V0A1 | ATPase H+ transporting V0 s... | XR_001752540.2 | 59.5% | (many diffs) | |
| 18 | human | 535 | ATP6V0A1 | ATPase H+ transporting V0 s... | XR_002958027.1 | 58.1% | (many diffs) | |
| 19 | human | 535 | ATP6V0A1 | ATPase H+ transporting V0 s... | XR_001752538.2 | 57.8% | (many diffs) | |
| 20 | human | 535 | ATP6V0A1 | ATPase H+ transporting V0 s... | XR_002958026.1 | 56.4% | (many diffs) | |
| 21 | human | 535 | ATP6V0A1 | ATPase H+ transporting V0 s... | XR_002958029.1 | 56.2% | (many diffs) | |
| 22 | human | 535 | ATP6V0A1 | ATPase H+ transporting V0 s... | XR_002958025.1 | 56.1% | (many diffs) | |
| 23 | human | 535 | ATP6V0A1 | ATPase H+ transporting V0 s... | XR_002958028.1 | 55.6% | (many diffs) | |
| 24 | human | 535 | ATP6V0A1 | ATPase H+ transporting V0 s... | XR_002958030.1 | 52.7% | (many diffs) | |
| 25 | mouse | 11975 | Atp6v0a1 | ATPase, H+ transporting, ly... | NM_001362638.1 | 88.9% | 96% | (many diffs) |
| 26 | mouse | 11975 | Atp6v0a1 | ATPase, H+ transporting, ly... | NM_016920.4 | 88.9% | 96% | (many diffs) |
| 27 | mouse | 11975 | Atp6v0a1 | ATPase, H+ transporting, ly... | XM_006532054.2 | 88.8% | 95.9% | (many diffs) |
| 28 | mouse | 11975 | Atp6v0a1 | ATPase, H+ transporting, ly... | NM_001243050.2 | 88.3% | 95.4% | (many diffs) |
| 29 | mouse | 11975 | Atp6v0a1 | ATPase, H+ transporting, ly... | NM_001362637.1 | 88.2% | 95.2% | (many diffs) |
| 30 | mouse | 11975 | Atp6v0a1 | ATPase, H+ transporting, ly... | XM_030245491.1 | 88.2% | 95.3% | (many diffs) |
| 31 | mouse | 11975 | Atp6v0a1 | ATPase, H+ transporting, ly... | NM_001243051.2 | 87.5% | 94.6% | (many diffs) |
| 32 | mouse | 11975 | Atp6v0a1 | ATPase, H+ transporting, ly... | NM_001362636.1 | 86.4% | 93.2% | (many diffs) |
| 33 | mouse | 11975 | Atp6v0a1 | ATPase, H+ transporting, ly... | XM_006532050.3 | 86.3% | 93.1% | (many diffs) |
| 34 | mouse | 11975 | Atp6v0a1 | ATPase, H+ transporting, ly... | XM_006532049.3 | 85.7% | 92.5% | (many diffs) |
| 35 | mouse | 11975 | Atp6v0a1 | ATPase, H+ transporting, ly... | XM_006532051.3 | 85% | 91.9% | (many diffs) |
| 36 | mouse | 11975 | Atp6v0a1 | ATPase, H+ transporting, ly... | XM_030245492.1 | 84.1% | 91.2% | (many diffs) |
| 37 | mouse | 11975 | Atp6v0a1 | ATPase, H+ transporting, ly... | XM_006532055.3 | 83.4% | 90.5% | (many diffs) |
| 38 | mouse | 11975 | Atp6v0a1 | ATPase, H+ transporting, ly... | NM_001362639.1 | 82.4% | 88.9% | (many diffs) |
| 39 | mouse | 11975 | Atp6v0a1 | ATPase, H+ transporting, ly... | NM_001243049.2 | 82.3% | 88.7% | (many diffs) |
| 40 | mouse | 11975 | Atp6v0a1 | ATPase, H+ transporting, ly... | XR_388335.2 | 73.2% | (many diffs) | |
| 41 | mouse | 11975 | Atp6v0a1 | ATPase, H+ transporting, ly... | NM_001362640.1 | 71.8% | 76.2% | (many diffs) |
| 42 | mouse | 11975 | Atp6v0a1 | ATPase, H+ transporting, ly... | XR_388336.2 | 54% | (many diffs) | |
| 43 | mouse | 11975 | Atp6v0a1 | ATPase, H+ transporting, ly... | NM_001362641.1 | 25% | 25.4% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 2577
- ORF length:
- 2511
- Sequence:
-
1 ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag 61 ttggcatggg ggagcttttc cggagtgaag aaatgacact ggcccagctt tttctacagt 121 cagaggctgc ttattgttgt gtcagtgaat taggagaact tggaaaggtt cagtttcgtg 181 acttaaatcc agatgtgaat gttttccaac ggaaatttgt gaatgaagtt agaagatgtg 241 aagaaatgga tcgaaagctt cgatttgttg agaaagagat aagaaaagct aacattccga 301 ttatggacac cggtgaaaac ccagaggttc ccttcccccg ggacatgatt gacttagagg 361 ccaattttga gaagattgaa aatgaactga aggaaatcaa cacaaaccag gaagctctga 421 agagaaactt cctggaactg accgaattaa aatttatact tcgcaaaact cagcaatttt 481 ttgatgagat ggcggatcca gacttgttgg aagagtcctc atccctcttg gagccaagtg 541 agatgggaag aggcactcct ttaagacttg gcttcgtggc tggtgtcatt aaccgggagc 601 gcatccctac ttttgagcgc atgctttggc gggtatgccg gggaaatgtg ttcctgcgac 661 aggctgaaat cgagaacccc ctggaggatc ctgtgactgg cgactacgtg cacaagtctg 721 tgtttatcat tttcttccaa ggcgatcagc tgaaaaacag agtcaagaaa atctgtgaag 781 ggttccgagc ctcactctat ccctgtcctg agacaccaca ggagaggaag gaaatggctt 841 ctggagtgaa taccaggatt gatgatctcc aaatggttct gaatcaaacg gaggatcacc 901 gccagagggt tctgcaggca gctgctaaga acatccgtgt ctggttcatc aaagtgcgga 961 agatgaaggc catctatcac accctgaacc tgtgcaacat agatgtgact cagaaatgct 1021 tgattgcaga ggtctggtgc cctgtcaccg accttgactc catccagttt gcactcagaa 1081 ggggcacgga acacagtggt tccactgtac cttccatttt gaacaggatg cagacaaacc 1141 agactccccc aacctataac aaaaccaaca agtttaccta tggctttcag aacatagtag 1201 atgcttatgg aattggaact taccgagaga taaatccagc tccgtatact attatcacgt 1261 tcccttttct atttgctgtg atgtttggag acttcggtca tggcatttta atgacccttt 1321 ttgctgtgtg gatggtactg agggagagcc ggatcctttc ccagaagaat gagaatgaga 1381 tgtttagcac tgtgttcagt ggtcgataca ttattttatt gatgggtgtg ttctccatgt 1441 acactggcct catctacaat gattgctttt ccaagtctct taatatcttt gggtcatcct 1501 ggagtgtacg gccgatgttt acttataatt ggactgaaga gacgcttcgg gggaaccctg 1561 ttctacagct gaacccagcc ctccctggag tgtttggtgg accataccct tttggcattg 1621 atccaatttg gaacattgct accaataaac tgacgttctt gaactccttt aagatgaaga 1681 tgtctgttat ccttggtatc atccatatgc tgtttggagt cagcctgagt ctgttcaacc 1741 atatctattt caagaagccc ctgaatatct actttggatt tattcctgaa ataatcttca 1801 tgacctcttt gtttggctat ttggttatcc ttatttttta caagtggacg gcctatgatg 1861 ctcatacctc tgagaatgca ccaagccttc tgatccattt cataaacatg ttcctctttt 1921 cctacccaga gtctggttat tcaatgttgt attctggaca gaaaggaatt cagtgtttcc 1981 tggtagtggt tgcactactg tgtgtacctt ggatgctgct gtttaaacca ttggtccttc 2041 gccgtcagta tttgaggaga aagcatttgg gaactctcaa ctttggtggg atcagggtgg 2101 gcaacggacc gacagaggag gatgctgaga ttattcagca tgaccagctc tccacccact 2161 cagaggacgc agacgagcct tccgaggacg aagtgtttga ctttggggac accatggtcc 2221 accaggccat ccacaccatc gagtactgcc tgggctgcat ctccaacact gcctcctact 2281 tgcggctctg ggccctcagc ctcgctcatg cgcagctgtc tgaggtgctt tggaccatgg 2341 tgatccacat cggcctgagc gtgaagagct tggcgggagg tttggtgctg ttcttcttct 2401 tcactgcctt tgccaccctg accgtggcca tcctcctgat catggagggc ctctcggcct 2461 ttctccacgc actgcgctta cactgggttg agttccagaa taaattctac agcgggaccg 2521 gtttcaagtt cttacccttc tccttcgagc atattcggga agggaagttt gaagagtgcc 2581 caactttctt gtacaaagtg gttggtaagc ctatccctaa ccctctcctc ggtctcgatt 2641 ctacgtagta atgagctagc gctaaccggt ggcgcgttaa gtcgacaatc aacctctgga 2701 tta