Transcript: Human XR_002958026.1

PREDICTED: Homo sapiens ATPase H+ transporting V0 subunit a1 (ATP6V0A1), transcript variant X2, misc_RNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
ATP6V0A1 (535)
Length:
4398
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
XR_002958026.1
NBCI Gene record:
ATP6V0A1 (535)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XR_002958026.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000038430 CCTGGAACTGACCGAATTAAA pLKO.1 499 3UTR 100% 15.000 12.000 N ATP6V0A1 n/a
2 TRCN0000038429 CCAGGATTGATGATCTCCAAA pLKO.1 921 3UTR 100% 4.950 3.960 N ATP6V0A1 n/a
3 TRCN0000307276 CCAGGATTGATGATCTCCAAA pLKO_005 921 3UTR 100% 4.950 3.960 N ATP6V0A1 n/a
4 TRCN0000038431 GCCGTCAGTATTTGAGGAGAA pLKO.1 2109 3UTR 100% 4.050 3.240 N ATP6V0A1 n/a
5 TRCN0000291106 GCCGTCAGTATTTGAGGAGAA pLKO_005 2109 3UTR 100% 4.050 3.240 N ATP6V0A1 n/a
6 TRCN0000380234 CACCCTGTCTGTGAGTCATTT pLKO_005 3051 3UTR 100% 13.200 9.240 N ATP6V0A1 n/a
7 TRCN0000381113 TGCATCTGCCACCGTAGTTTC pLKO_005 3324 3UTR 100% 10.800 7.560 N ATP6V0A1 n/a
8 TRCN0000038433 CCCAGAGTCTGGTTATTCAAT pLKO.1 1993 3UTR 100% 5.625 3.938 N ATP6V0A1 n/a
9 TRCN0000333635 CCCAGAGTCTGGTTATTCAAT pLKO_005 1993 3UTR 100% 5.625 3.938 N ATP6V0A1 n/a
10 TRCN0000038432 CCCTGAATATCTACTTTGGAT pLKO.1 1827 3UTR 100% 3.000 2.100 N ATP6V0A1 n/a
11 TRCN0000291164 CCCTGAATATCTACTTTGGAT pLKO_005 1827 3UTR 100% 3.000 2.100 N ATP6V0A1 n/a
12 TRCN0000379816 GGGTCCAGGAAGATGATATTT pLKO_005 3430 3UTR 100% 15.000 9.000 N ATP6V0A1 n/a
13 TRCN0000101518 CAGAACATAGTAGATGCTTAT pLKO.1 1256 3UTR 100% 10.800 6.480 N Atp6v0a1 n/a
14 TRCN0000288573 CAGAACATAGTAGATGCTTAT pLKO_005 1256 3UTR 100% 10.800 6.480 N Atp6v0a1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XR_002958026.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_00140 pDONR223 100% 56.4% None (many diffs) n/a
2 ccsbBroad304_00140 pLX_304 0% 56.4% V5 (many diffs) n/a
3 TRCN0000468785 CAAACTTCCGTCTGTAGTTACGTC pLX_317 2.2% 56.4% V5 (many diffs) n/a
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