Construct: ORF ccsbBroad304_00776

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF004828.1_s304c1, BRDN0000399418
Derived from:
ccsbBroadEn_00776
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
HOXB6 (3216)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_00776
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 3216 HOXB6 homeobox B6 NM_001369397.2 100% 100%
2 human 3216 HOXB6 homeobox B6 NM_018952.5 100% 100%
3 human 3216 HOXB6 homeobox B6 XM_011524727.3 77.7% 77.7% 1_192del
4 mouse 15414 Hoxb6 homeobox B6 NM_008269.1 91.2% 97.7% (many diffs)
5 mouse 15414 Hoxb6 homeobox B6 XM_006532292.3 66.1% 70.8% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
738
ORF length:
672
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatgag ttcctatttc gtgaactcca ccttccccgt cactctggcc agcgggcagg
121agtccttcct gggccagcta ccgctctatt cgtcgggcta tgcggacccg ctgagacatt
181accccgcgcc ctacgggcca gggccgggcc aggacaaggg ctttgccact tcctcctatt
241acccgccggc gggcggtggc tacggccgag cggcgccctg cgactacggg ccggcgccgg
301ccttctaccg cgagaaagag tcggcctgcg cactctccgg cgccgacgag cagcccccgt
361tccaccccga gccgcggaag tcggactgcg cgcaggacaa gagcgtgttc ggcgagacag
421aagagcagaa gtgctccact ccggtctacc cgtggatgca gcggatgaat tcgtgcaaca
481gttcctcctt tgggcccagc ggccggcgag gccgccagac atacacacgt taccagacgc
541tggagctgga gaaggagttt cactacaatc gctacctgac gcggcggcgg cgcatcgaga
601tcgcgcacgc cctgtgcctg acggagaggc agatcaagat atggttccag aaccgacgca
661tgaagtggaa aaaggagagc aaactgctca gcgcgtctca gctcagtgcc gaggaggagg
721aagaaaaaca ggccgagtgc ccaactttct tgtacaaagt ggttggtaag cctatcccta
781accctctcct cggtctcgat tctacgtagt aatgagctag cgctaaccgg tggcgcgtta
841agtcgacaat caacctctgg atta

Download FASTA (ORF) (Full)