Construct: ORF ccsbBroad304_00962

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF017918.1_s304c1, BRDN0000405649
Derived from:
ccsbBroadEn_00962
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
SMAD4 (4089)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_00962
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 4089 SMAD4 SMAD family member 4 NM_005359.6 100% 100%
2 mouse 17128 Smad4 SMAD family member 4 NM_008540.3 91.5% 98.3% (many diffs)
3 mouse 17128 Smad4 SMAD family member 4 XM_011246855.2 79.4% 78.7% (many diffs)
4 mouse 17128 Smad4 SMAD family member 4 XM_006525701.3 77.5% 84.2% (many diffs)
5 mouse 17128 Smad4 SMAD family member 4 NM_001364968.1 74.5% 81.1% (many diffs)
6 mouse 17128 Smad4 SMAD family member 4 NM_001364967.1 65.6% 64.7% (many diffs)
7 mouse 17128 Smad4 SMAD family member 4 NR_157374.1 15.5% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1722
ORF length:
1656
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatgga caatatgtct attacgaata caccaacaag taatgatgcc tgtctgagca
121ttgtgcatag tttgatgtgc catagacaag gtggagagag tgaaacattt gcaaaaagag
181caattgaaag tttggtaaag aagctgaagg agaaaaaaga tgaattggat tctttaataa
241cagctataac tacaaatgga gctcatccta gtaaatgtgt taccatacag agaacattgg
301atgggaggct tcaggtggct ggtcggaaag gatttcctca tgtgatctat gcccgtctct
361ggaggtggcc tgatcttcac aaaaatgaac taaaacatgt taaatattgt cagtatgcgt
421ttgacttaaa atgtgatagt gtctgtgtga atccatatca ctacgaacga gttgtatcac
481ctggaattga tctctcagga ttaacactgc agagtaatgc tccatcaagt atgatggtga
541aggatgaata tgtgcatgac tttgagggac agccatcgtt gtccactgaa ggacattcaa
601ttcaaaccat ccagcatcca ccaagtaatc gtgcatcgac agagacatac agcaccccag
661ctctgttagc cccatctgag tctaatgcta ccagcactgc caactttccc aacattcctg
721tggcttccac aagtcagcct gccagtatac tggggggcag ccatagtgaa ggactgttgc
781agatagcatc agggcctcag ccaggacagc agcagaatgg atttactggt cagccagcta
841cttaccatca taacagcact accacctgga ctggaagtag gactgcacca tacacaccta
901atttgcctca ccaccaaaac ggccatcttc agcaccaccc gcctatgccg ccccatcccg
961gacattactg gcctgttcac aatgagcttg cattccagcc tcccatttcc aatcatcctg
1021ctcctgagta ttggtgttcc attgcttact ttgaaatgga tgttcaggta ggagagacat
1081ttaaggttcc ttcaagctgc cctattgtta ctgttgatGG ATACGTGGAC CCTTCTGGAG
1141GAGATCGCTT TTGTTTGGGT CAACTCTCCA ATGTCCACAG GACAGAAGCC ATTGAGAGAG
1201CAAGGTTGCA CATAGGCAAA GGTGTGCAGT TGGAATGTAA AGGTGAAGGT GATGTTTGGG
1261TCAGGTGCCT TAGTGACCAC GCGGTCTTTG TACAGAGTTA CTACTTAGAC AGAGAAGCTG
1321GGCGTGCACC TGGAGATGCT GTTCATAAGA TCTACCCAAG TGCATATATA AAGGTCTTTG
1381ATTTGCGTCA GTGTCATCGA CAGATGCAGC AGCAGGCGGC TACTGCACAA GCTGCAGCAG
1441CTGCCCAGGC AGCAGCCGTG GCAGGAAACA TCCCTGGCCC AGGATCAGTA GGTGGAATAG
1501CTCCAGCTAT CAGTCTGTCA GCTGCTGCTG GAATTGGTGT TGATGACCTT CGTCGCTTAT
1561GCATACTCAG GATGAGTTTT GTGAAAGGCT GGGGACCGGA TTACCCAAGA CAGAGCATCA
1621AAGAAACACC TTGCTGGATT GAAATTCACT TACACCGGGC CCTCCAGCTC CTAGACGAAG
1681TACTTCATAC CATGCCGATT GCAGACCCAC AACCTTTAGA CTGCCCAACT TTCTTGTACa
1741aagtggttgg taagcctatc cctaaccctc tcctcggtct cgattctacg tagtaatgag
1801ctagcgctaa ccggtggcgc gttaagtcga caatcaacct ctggatta

Download FASTA (ORF) (Full)