Construct: ORF ccsbBroad304_00967

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF002126.1_s304c1, BRDN0000411577
Derived from:
ccsbBroadEn_00967
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
MAGEA5 (4104)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_00967
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 100533997 MAGEA10-MAGEA5 MAGEA10-MAGEA5 readthrough NM_001204811.3 100% 100%
2 human 4104 MAGEA5 MAGE family member A5 NM_021049.4 100% 100%
3 human 4103 MAGEA4 MAGE family member A4 NM_001011548.1 34.5% 30.5% (many diffs)
4 human 4103 MAGEA4 MAGE family member A4 NM_001011549.1 34.5% 30.5% (many diffs)
5 human 4103 MAGEA4 MAGE family member A4 NM_001011550.1 34.5% 30.5% (many diffs)
6 human 4103 MAGEA4 MAGE family member A4 NM_002362.4 34.5% 30.5% (many diffs)
7 human 4103 MAGEA4 MAGE family member A4 XM_005274678.3 34.5% 30.5% (many diffs)
8 human 4103 MAGEA4 MAGE family member A4 XM_005274679.4 34.5% 30.5% (many diffs)
9 human 4102 MAGEA3 MAGE family member A3 NM_005362.4 34.3% 28.3% (many diffs)
10 human 4105 MAGEA6 MAGE family member A6 NM_005363.3 34.3% 28.3% (many diffs)
11 human 4105 MAGEA6 MAGE family member A6 NM_175868.2 34.3% 28.3% (many diffs)
12 human 4102 MAGEA3 MAGE family member A3 XM_005274676.3 34.3% 28.3% (many diffs)
13 human 4102 MAGEA3 MAGE family member A3 XM_006724818.2 34.3% 28.3% (many diffs)
14 human 4102 MAGEA3 MAGE family member A3 XM_011531160.3 34.3% 28.3% (many diffs)
15 human 4102 MAGEA3 MAGE family member A3 XM_011531161.2 34.3% 28.3% (many diffs)
16 human 4100 MAGEA1 MAGE family member A1 NM_004988.5 31.7% 26.5% (many diffs)
17 human 4103 MAGEA4 MAGE family member A4 XM_005274677.2 27.6% 24.4% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
441
ORF length:
372
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcaccat gtctcttgag cagaagagtc agcactgcaa gcctgaggaa ggccttgaca
121cccaagaaga ggccctgggc ctggtgggtg tgcaggctgc cactactgag gagcaggagg
181ctgtgtcctc ctcctctcct ctggtcccag gcaccctggg ggaggtgcct gctgctgggt
241caccaggtcc tctcaagagt cctcagggag cctccgccat ccccactgcc atcgatttca
301ctctatggag gcaatccatt aagggctcca gcaaccaaga agaggagggg ccaagcacct
361cccctgaccc agagtctgtg ttccgagcag cactcagtaa gaaggtggct gacttgattc
421attttctgct cctcaagtat ttgccaactt tcttgtacaa agtggttggt aagcctatcc
481ctaaccctct cctcggtctc gattctacgt agtaatgagc tagcgctaac cggtggcgcg
541ttaagtcgac aatcaacctc tggatta

Download FASTA (ORF) (Full)