Construct: ORF ccsbBroad304_01107

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF016515.1_s304c1, BRDN0000406108
Derived from:
ccsbBroadEn_01107
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
NPM1 (4869)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_01107
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 4869 NPM1 nucleophosmin 1 NM_199185.3 100% 100%
2 human 4869 NPM1 nucleophosmin 1 NM_001355006.1 90.1% 90.1% 580_666del
3 human 4869 NPM1 nucleophosmin 1 NM_002520.6 90.1% 90.1% 580_666del
4 human 4869 NPM1 nucleophosmin 1 NM_001355009.2 86.5% 86% (many diffs)
5 human 4869 NPM1 nucleophosmin 1 NM_001037738.3 78% 77.5% (many diffs)
6 human 4869 NPM1 nucleophosmin 1 NM_001355007.1 68.3% 68.3% 0_1ins192;388_474del
7 human 4869 NPM1 nucleophosmin 1 NM_001355010.1 63% 63% 57_58ins294
8 human 4869 NPM1 nucleophosmin 1 NR_149149.1 46% (many diffs)
9 human 29121 CLEC2D C-type lectin domain family... NR_036693.3 13.8% (many diffs)
10 mouse 18148 Npm1 nucleophosmin 1 NM_008722.3 81.9% 86.3% (many diffs)
11 mouse 18148 Npm1 nucleophosmin 1 NM_001252260.1 78% 81.9% (many diffs)
12 mouse 18148 Npm1 nucleophosmin 1 NM_001252261.1 70.5% 73.8% (many diffs)
13 mouse 102639044 LOC102639044 nucleophosmin pseudogene XR_389514.3 50.2% (many diffs)
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Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
861
ORF length:
795
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatgga agattcgatg gacatggaca tgagccccct gaggccccag aactatcttt
121tcggttgtga actaaaggcc gacaaagatt atcactttaa ggtggataat gatgaaaatg
181agcaccagtt atctttaaga acggtcagtt taggggctgg tgcaaaggat gagttgcaca
241ttgttgaagc agaggcaatg aattacgaag gcagtccaat taaagtaaca ctggcaactt
301tgaaaatgtc tgtacagcca acggtttccc ttgggggctt tgaaataaca ccaccagtgg
361tcttaaggtt gaagtgtggt tcagggccag tgcatattag tggacagcac ttagtagctg
421tggaggaaga tgcagagtca gaagatgaag aggaggagga tgtgaaactc ttaagtatat
481ctggaaagcg gtctgcccct ggaggtggta gcaaggttcc acagaaaaaa gtaaaacttg
541ctgctgatga agatgatgac gatgatgatg aagaggatga tgatgaagat gatgatgatg
601atgattttga tgatgaggaa gctgaagaaa aagcgccagt gaagaaagga caagaatcct
661tcaagaaaca ggaaaaaact cctaaaacac caaaaggacc tagttctgta gaagacatta
721aagcaaaaat gcaagcaagt atagaaaaag gtggttctct tcccaaagtg gaagccaaat
781tcatcaatta tgtgaagaat tgcttccgga tgactgacca agaggctatt caagatctct
841ggcagtggag gaagtctctt tacccaactt tcttgtacaa agtggttggt aagcctatcc
901ctaaccctct cctcggtctc gattctacgt agtaatgagc tagcgctaac cggtggcgcg
961ttaagtcgac aatcaacctc tggatta

Download FASTA (ORF) (Full)