Construct: ORF ccsbBroad304_01612
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF010614.1_s304c1, BRDN0000400836
- Derived from:
- ccsbBroadEn_01612
- DNA Barcode:
- None
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- STAU1 (6780)
Vector Information:
- Vector Backbone:
- pLX_304
- Pol II Cassette 1:
- PGK-BlastR
- Pol II Cassette 2:
- CMV-ccsbBroad304_01612
- Selection Marker:
- BlastR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 6780 | STAU1 | staufen double-stranded RNA... | NM_001319135.1 | 100% | 100% | |
| 2 | human | 6780 | STAU1 | staufen double-stranded RNA... | NM_001322929.1 | 100% | 100% | |
| 3 | human | 6780 | STAU1 | staufen double-stranded RNA... | NM_001322930.1 | 100% | 100% | |
| 4 | human | 6780 | STAU1 | staufen double-stranded RNA... | NM_017453.3 | 100% | 100% | |
| 5 | human | 6780 | STAU1 | staufen double-stranded RNA... | NM_001322932.1 | 98.9% | 98.9% | 608_625del |
| 6 | human | 6780 | STAU1 | staufen double-stranded RNA... | NM_001322933.1 | 98.9% | 98.9% | 608_625del |
| 7 | human | 6780 | STAU1 | staufen double-stranded RNA... | XM_006723865.1 | 98.9% | 98.9% | 608_625del |
| 8 | human | 6780 | STAU1 | staufen double-stranded RNA... | NM_001322931.1 | 91.3% | 88.4% | (many diffs) |
| 9 | human | 6780 | STAU1 | staufen double-stranded RNA... | XM_017028028.1 | 91.3% | 88.4% | (many diffs) |
| 10 | human | 6780 | STAU1 | staufen double-stranded RNA... | NM_001322928.1 | 90.3% | 87.5% | (many diffs) |
| 11 | human | 6780 | STAU1 | staufen double-stranded RNA... | XM_011529015.1 | 90.3% | 87.5% | (many diffs) |
| 12 | human | 6780 | STAU1 | staufen double-stranded RNA... | NM_004602.3 | 85.9% | 85.9% | 0_1ins243 |
| 13 | human | 6780 | STAU1 | staufen double-stranded RNA... | NM_017452.3 | 85.9% | 85.9% | 0_1ins243 |
| 14 | human | 6780 | STAU1 | staufen double-stranded RNA... | NM_017454.3 | 85.9% | 85.9% | 0_1ins243 |
| 15 | human | 6780 | STAU1 | staufen double-stranded RNA... | XM_024451973.1 | 85.9% | 85.9% | 0_1ins243 |
| 16 | human | 6780 | STAU1 | staufen double-stranded RNA... | NM_001037328.2 | 85% | 85% | 0_1ins243;365_382del |
| 17 | human | 6780 | STAU1 | staufen double-stranded RNA... | NM_001319134.1 | 85% | 85% | 0_1ins243;365_382del |
| 18 | human | 6780 | STAU1 | staufen double-stranded RNA... | NM_001322927.1 | 85% | 85% | 0_1ins243;365_382del |
| 19 | human | 6780 | STAU1 | staufen double-stranded RNA... | XM_005260527.1 | 85% | 85% | 0_1ins243;365_382del |
| 20 | mouse | 20853 | Stau1 | staufen (RNA binding protei... | NM_001109905.2 | 73.8% | 77.4% | (many diffs) |
| 21 | mouse | 20853 | Stau1 | staufen (RNA binding protei... | NM_011490.4 | 73.3% | 77.2% | (many diffs) |
| 22 | mouse | 20853 | Stau1 | staufen (RNA binding protei... | NM_001291160.1 | 73.1% | 76.7% | (many diffs) |
| 23 | mouse | 20853 | Stau1 | staufen (RNA binding protei... | NM_001109906.2 | 73% | 76.6% | (many diffs) |
| 24 | mouse | 20853 | Stau1 | staufen (RNA binding protei... | XM_006499071.1 | 72.4% | 75.9% | (many diffs) |
| 25 | mouse | 20853 | Stau1 | staufen (RNA binding protei... | XM_006499072.1 | 72.4% | 75.9% | (many diffs) |
| 26 | mouse | 20853 | Stau1 | staufen (RNA binding protei... | XM_011239406.1 | 65.9% | 68.7% | (many diffs) |
| 27 | mouse | 20853 | Stau1 | staufen (RNA binding protei... | NR_111895.1 | 34.8% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1797
- ORF length:
- 1731
- Sequence:
-
1 ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag 61 ttggcatgtc tcaagttcaa gtgcaagttc agaacccatc tgctgctctc tcagggagcc 121 aaatactgaa caagaaccag tctcttctct cacagccttt gatgagtatt ccttctacta 181 ctagctctct gccctctgaa aatgcaggta gacccattca aaactctgct ttaccctctg 241 catctattac atccaccagt gcagctgcag aaagcataac ccctactgta gaactaaatg 301 cactgtgcat gaaacttgga aaaaaaccaa tgtataagcc tgttgaccct tactctcgga 361 tgcagtccac ctataactac aacatgagag gaggtgctta tcccccgagg tacttttacc 421 catttccagt tccaccttta ctttatcaag tggaactttc tgtgggagga cagcaattta 481 atggcaaagg aaagacaaga caggctgcga aacacgatgc tgctgccaaa gcgttgagga 541 tcctgcagaa tgagcccctg ccagagaggc tggaggtgaa tggaagagaa tccgaagaag 601 aaaatctcaa taaatctgaa ataagtcaag tgtttgagat tgcacttaaa cggaacttgc 661 ctgtgaattt cgaggtggcc cgggagagtg gcccacccca catgaagaac tttgtgacca 721 aggtttcggt tggggagttt gtgggggaag gtgaagggaa aagcaagaag atttcaaaga 781 aaaatgccgc catagctgtt cttgaggagc tgaagaagtt accgcccctg cctgcagttg 841 aacgagtaaa gcctagaatc aaaaagaaaa caaaacccat agtcaagcca cagacaagcc 901 cagaatatgg ccaggggatc aatccgatta gccgactggc ccagatccag caggcaaaaa 961 aggagaagga gccagagtac acgctcctca cagagcgagg cctcccgcgc cgcagggagt 1021 ttgtgatgca ggtgaaggtt ggaaaccaca ctgcagaagg aacgggcacc aacaagaagg 1081 tggccaagcg caatgcagcc gagaacatgc tggagatcct tggtttcaaa gtcccgcagg 1141 cgcagcccac caaacccgca ctcaagtcag aggagaagac acccataaag aaaccagggg 1201 atggaagaaa agtaaccttt tttgaacctg gctctgggga tgaaaatggg actagtaata 1261 aagaggatga gttcaggatg ccttatctaa gtcatcagca gctgcctgct ggaattcttc 1321 ccatggtgcc cgaggtcgcc caggctgtag gagttagtca aggacatcac accaaagatt 1381 ttaccagggc agctccgaat cctgccaagg ccacggtaac tgccatgata gcccgagagt 1441 tgttgtatgg gggcacctcg cccacagccg agaccatttt aaagaataac atctcttcag 1501 gccacgtacc ccatggacct ctcacgagac cctctgagca actggactat ctttccagag 1561 tccagggatt ccaggttgaa tacaaagact tccccaaaaa caacaagaac gaatttgtat 1621 ctcttatcaa ttgctcctct cagccacctc tgatcagcca tggtatcggc aaggatgtgg 1681 agtcctgcca tgatatggct gcgctgaaca tcttaaagtt gctgtctgag ttggaccaac 1741 aaagtacaga gatgccaaga acaggaaacg gaccaatgtc tgtgtgtggg aggtgctgcc 1801 caactttctt gtacaaagtg gttggtaagc ctatccctaa ccctctcctc ggtctcgatt 1861 ctacgtagta atgagctagc gctaaccggt ggcgcgttaa gtcgacaatc aacctctgga 1921 tta