Transcript: Human NM_017453.3

Homo sapiens staufen double-stranded RNA binding protein 1 (STAU1), transcript variant T3, mRNA.

Source:
NCBI, updated 2019-08-27
Taxon:
Homo sapiens (human)
Gene:
STAU1 (6780)
Length:
3714
CDS:
415..2148

Additional Resources:

NCBI RefSeq record:
NM_017453.3
NBCI Gene record:
STAU1 (6780)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_017453.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000161773 CAGTTGAACGAGTAAAGCCTA pLKO.1 1184 CDS 100% 2.640 3.696 N STAU1 n/a
2 TRCN0000158514 CAAGTGTTTGAGATTGCACTT pLKO.1 976 CDS 100% 0.405 0.567 N STAU1 n/a
3 TRCN0000165442 GCCTGCAGTTGAACGAGTAAA pLKO.1 1179 CDS 100% 13.200 10.560 N STAU1 n/a
4 TRCN0000219938 GAGGAGAAGACACCCATAAAG pLKO.1 1519 CDS 100% 13.200 9.240 N STAU1 n/a
5 TRCN0000159875 GTGTTTGAGATTGCACTTAAA pLKO.1 979 CDS 100% 13.200 9.240 N STAU1 n/a
6 TRCN0000219937 TCGGATGCAGTCCACCTATAA pLKO.1 705 CDS 100% 13.200 9.240 N STAU1 n/a
7 TRCN0000159567 CCAACAGTGATCTGTATTCTT pLKO.1 2711 3UTR 100% 5.625 3.938 N STAU1 n/a
8 TRCN0000166217 CCATCACCACTGCTTTCTCTT pLKO.1 2690 3UTR 100% 4.950 3.465 N STAU1 n/a
9 TRCN0000164920 GCTGAAACAGTCCTGGACTTT pLKO.1 2959 3UTR 100% 4.950 3.465 N STAU1 n/a
10 TRCN0000165690 CCAGGGATTCCAGGTTGAATA pLKO.1 1911 CDS 100% 13.200 7.920 N STAU1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_017453.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_01612 pDONR223 100% 100% 100% None n/a
2 ccsbBroad304_01612 pLX_304 0% 100% 100% V5 n/a
3 TRCN0000491368 GTCATTTTCATGCAGCTTGACGAA pLX_317 19.9% 100% 100% V5 n/a
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