Construct: ORF ccsbBroad304_01901
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF015265.1_s304c1, BRDN0000408414
- Derived from:
- ccsbBroadEn_01901
- DNA Barcode:
- None
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- H2BC9 (8345)
Vector Information:
- Vector Backbone:
- pLX_304
- Pol II Cassette 1:
- PGK-BlastR
- Pol II Cassette 2:
- CMV-ccsbBroad304_01901
- Selection Marker:
- BlastR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 8345 | H2BC9 | H2B clustered histone 9 | NM_003524.2 | 100% | 100% | |
| 2 | human | 8344 | H2BC6 | H2B clustered histone 6 | NM_003523.2 | 93.9% | 99.2% | (many diffs) |
| 3 | human | 8340 | H2BC13 | H2B clustered histone 13 | NM_003519.3 | 91.5% | 97.6% | (many diffs) |
| 4 | human | 85236 | H2BC12 | H2B clustered histone 12 | NM_001312653.1 | 91.2% | 98.4% | (many diffs) |
| 5 | human | 85236 | H2BC12 | H2B clustered histone 12 | NM_080593.2 | 91.2% | 98.4% | (many diffs) |
| 6 | human | 8343 | H2BC7 | H2B clustered histone 7 | NM_003522.3 | 91% | 99.2% | (many diffs) |
| 7 | human | 8341 | H2BC15 | H2B clustered histone 15 | NM_003520.3 | 91% | 98.4% | (many diffs) |
| 8 | human | 8346 | H2BC10 | H2B clustered histone 10 | NM_003525.2 | 90.7% | 99.2% | (many diffs) |
| 9 | human | 54145 | H2BS1 | H2B.S histone 1 | NM_017445.3 | 90.7% | 96.8% | (many diffs) |
| 10 | human | 102724334 | LOC102724334 | histone H2B type F-S-like | XM_006723918.4 | 90.7% | 96.8% | (many diffs) |
| 11 | human | 8347 | H2BC4 | H2B clustered histone 4 | NM_003526.2 | 90.4% | 99.2% | (many diffs) |
| 12 | human | 3017 | H2BC5 | H2B clustered histone 5 | NM_021063.3 | 90.4% | 98.4% | (many diffs) |
| 13 | human | 3017 | H2BC5 | H2B clustered histone 5 | NM_138720.2 | 90.4% | 98.4% | (many diffs) |
| 14 | human | 8970 | H2BC11 | H2B clustered histone 11 | NM_021058.3 | 90.2% | 97.6% | (many diffs) |
| 15 | human | 8348 | H2BC17 | H2B clustered histone 17 | NM_003527.4 | 89.6% | 99.2% | (many diffs) |
| 16 | human | 440689 | H2BC18 | H2B clustered histone 18 | NM_001024599.4 | 88.8% | 99.2% | (many diffs) |
| 17 | human | 8349 | H2BC21 | H2B clustered histone 21 | NM_003528.2 | 88.6% | 98.4% | (many diffs) |
| 18 | human | 3018 | H2BC3 | H2B clustered histone 3 | NM_021062.2 | 88.6% | 96.8% | (many diffs) |
| 19 | human | 8339 | H2BC8 | H2B clustered histone 8 | NM_003518.3 | 87.8% | 99.2% | (many diffs) |
| 20 | human | 8342 | H2BC14 | H2B clustered histone 14 | NM_003521.2 | 87.5% | 96% | (many diffs) |
| 21 | human | 128312 | H2BU1 | H2B.U histone 1 | NM_175055.2 | 85.7% | 96% | (many diffs) |
| 22 | human | 440689 | H2BC18 | H2B clustered histone 18 | NM_001161334.1 | 83.5% | 93.2% | (many diffs) |
| 23 | human | 3017 | H2BC5 | H2B clustered histone 5 | XM_005249039.4 | 76% | 82.6% | (many diffs) |
| 24 | human | 337875 | H2BP1 | H2B histone pseudogene 1 | NR_160944.2 | 66.9% | (many diffs) | |
| 25 | human | 337873 | H2BC20P | H2B clustered histone 20, p... | NR_036461.1 | 56.4% | (many diffs) | |
| 26 | human | 338391 | H2BP2 | H2B histone pseudogene 2 | NR_160915.1 | 20.8% | (many diffs) | |
| 27 | human | 337875 | H2BP1 | H2B histone pseudogene 1 | NR_027337.2 | 18.2% | (many diffs) | |
| 28 | human | 106479023 | H3P4 | H3 histone pseudogene 4 | NR_160941.1 | 16.9% | (many diffs) | |
| 29 | human | 337875 | H2BP1 | H2B histone pseudogene 1 | NR_160942.1 | 15.6% | (many diffs) | |
| 30 | human | 106479023 | H3P4 | H3 histone pseudogene 4 | NR_160940.1 | 15.1% | (many diffs) | |
| 31 | human | 338391 | H2BP2 | H2B histone pseudogene 2 | NR_160913.1 | 13.6% | (many diffs) | |
| 32 | human | 338391 | H2BP2 | H2B histone pseudogene 2 | NR_160914.1 | 11.2% | (many diffs) | |
| 33 | mouse | 319180 | Hist1h2bf | histone cluster 1, H2bf | NM_178195.2 | 92% | 98.4% | (many diffs) |
| 34 | mouse | 68024 | Hist1h2bc | histone cluster 1, H2bc | NM_001290380.1 | 91.5% | 99.2% | (many diffs) |
| 35 | mouse | 68024 | Hist1h2bc | histone cluster 1, H2bc | NM_023422.3 | 91.5% | 99.2% | (many diffs) |
| 36 | mouse | 319179 | Hist1h2be | histone cluster 1, H2be | NM_001177653.1 | 91.2% | 99.2% | (many diffs) |
| 37 | mouse | 319179 | Hist1h2be | histone cluster 1, H2be | NM_001290530.1 | 91.2% | 99.2% | (many diffs) |
| 38 | mouse | 319179 | Hist1h2be | histone cluster 1, H2be | NM_178194.4 | 91.2% | 99.2% | (many diffs) |
| 39 | mouse | 319182 | Hist1h2bh | histone cluster 1, H2bh | NM_178197.2 | 91.2% | 98.4% | (many diffs) |
| 40 | mouse | 319186 | Hist1h2bm | histone cluster 1, H2bm | NM_178200.2 | 91.2% | 98.4% | (many diffs) |
| 41 | mouse | 665622 | Hist1h2br | histone cluster 1 H2br | NM_001313878.1 | 91% | 98.4% | (many diffs) |
| 42 | mouse | 665596 | Hist1h2bq | histone cluster 1, H2bq | NM_001313880.1 | 91% | 98.4% | (many diffs) |
| 43 | mouse | 319185 | Hist1h2bl | histone cluster 1, H2bl | NM_178199.2 | 91% | 98.4% | (many diffs) |
| 44 | mouse | 319187 | Hist1h2bn | histone cluster 1, H2bn | NM_178201.2 | 91% | 98.4% | (many diffs) |
| 45 | mouse | 319181 | Hist1h2bg | histone cluster 1, H2bg | NM_178196.4 | 90.7% | 99.2% | (many diffs) |
| 46 | mouse | 319183 | Hist1h2bj | histone cluster 1, H2bj | NM_178198.2 | 90.7% | 98.4% | (many diffs) |
| 47 | mouse | 319188 | Hist1h2bp | histone cluster 1, H2bp | NM_001290466.1 | 90.4% | 96.8% | (many diffs) |
| 48 | mouse | 319188 | Hist1h2bp | histone cluster 1, H2bp | XM_006516690.2 | 90.4% | 96.8% | (many diffs) |
| 49 | mouse | 319184 | Hist1h2bk | histone cluster 1, H2bk | NM_175665.2 | 90.2% | 97.6% | (many diffs) |
| 50 | mouse | 319178 | Hist1h2bb | histone cluster 1, H2bb | NM_175664.3 | 88.8% | 96% | (many diffs) |
| 51 | mouse | 319189 | Hist2h2bb | histone cluster 2, H2bb | NM_175666.2 | 87% | 99.2% | (many diffs) |
| 52 | mouse | 78303 | Hist3h2ba | histone cluster 3, H2ba | NM_030082.4 | 85.8% | 92.8% | (many diffs) |
| 53 | mouse | 665596 | Hist1h2bq | histone cluster 1, H2bq | NM_001097979.2 | 85.5% | 91.7% | (many diffs) |
| 54 | mouse | 665622 | Hist1h2br | histone cluster 1 H2br | NM_001110555.1 | 85.5% | 91.7% | (many diffs) |
| 55 | mouse | 319190 | Hist2h2be | histone cluster 2, H2be | NM_178214.4 | 85.1% | 95.2% | (many diffs) |
| 56 | mouse | 319188 | Hist1h2bp | histone cluster 1, H2bp | NM_178202.2 | 82.8% | 88.4% | (many diffs) |
| 57 | mouse | 319177 | Hist1h2ba | histone cluster 1, H2ba | NM_175663.2 | 80.4% | 86.6% | (many diffs) |
| 58 | mouse | 382522 | Hist3h2bb-ps | histone cluster 3, H2bb, ps... | NR_134309.1 | 71.1% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 447
- ORF length:
- 378
- Sequence:
-
1 ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag 61 ttggcaccat gcctgatcca gctaagtccg ctcccgcccc gaagaagggc tccaagaagg 121 cggtgaccaa ggcgcagaag aaggatggca agaagcgtaa acgcagccgc aaggagagct 181 actccgtata cgtttacaag gtgctgaagc aagtccaccc cgacaccggc atctcctcca 241 aagccatggg gatcatgaat tcctttgtca acgatatctt cgagcgcatc gccggcgagg 301 cttcccgcct ggctcattac aacaagcgtt cgaccatcac ctccagggag atccagacag 361 ccgtgcgcct gctgctgcct ggggaactgg ccaagcacgc cgtgtccgag ggcactaagg 421 ccgtcaccaa gtacaccagc tccaaattgc caactttctt gtacaaagtg gttggtaagc 481 ctatccctaa ccctctcctc ggtctcgatt ctacgtagta atgagctagc gctaaccggt 541 ggcgcgttaa gtcgacaatc aacctctgga tta