Construct: ORF ccsbBroad304_01971

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF013619.1_s304c1, BRDN0000407771
Derived from:
ccsbBroadEn_01971
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
TP63 (8626)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_01971
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 8626 TP63 tumor protein p63 NM_003722.5 100% 100%
2 human 8626 TP63 tumor protein p63 NM_001329148.2 99.4% 99.2% 1117_1118insGTACGAAGCGCC
3 human 8626 TP63 tumor protein p63 NM_001329964.1 97.7% 95.6% (many diffs)
4 human 8626 TP63 tumor protein p63 NM_001114980.2 85.7% 84.1% (many diffs)
5 human 8626 TP63 tumor protein p63 NM_001114978.2 81.4% 80.8% (many diffs)
6 human 8626 TP63 tumor protein p63 NM_001329144.2 74.8% 73.3% (many diffs)
7 human 8626 TP63 tumor protein p63 NM_001329146.2 73.1% 71.7% (many diffs)
8 human 8626 TP63 tumor protein p63 NM_001114979.2 69.8% 65.3% (many diffs)
9 human 8626 TP63 tumor protein p63 NM_001114981.2 67.2% 65% (many diffs)
10 human 8626 TP63 tumor protein p63 NM_001329145.2 60.5% 57.5% (many diffs)
11 human 8626 TP63 tumor protein p63 NM_001329149.2 60% 56.8% (many diffs)
12 human 8626 TP63 tumor protein p63 NM_001114982.2 55.7% 49.8% (many diffs)
13 human 8626 TP63 tumor protein p63 NM_001329150.2 47.3% 44.6% (many diffs)
14 mouse 22061 Trp63 transformation related prot... NM_001127259.1 91.2% 97.9% (many diffs)
15 mouse 22061 Trp63 transformation related prot... XM_006522000.2 90.6% 97.2% (many diffs)
16 mouse 22061 Trp63 transformation related prot... NM_011641.2 78.2% 82.7% (many diffs)
17 mouse 22061 Trp63 transformation related prot... NM_001127264.1 77.6% 82% (many diffs)
18 mouse 22061 Trp63 transformation related prot... XM_006522001.3 75% 81.1% (many diffs)
19 mouse 22061 Trp63 transformation related prot... NM_001127260.1 74.5% 79.4% (many diffs)
20 mouse 22061 Trp63 transformation related prot... XM_006522002.1 63.5% 64.3% (many diffs)
21 mouse 22061 Trp63 transformation related prot... NM_001127261.1 63% 63.6% (many diffs)
22 mouse 22061 Trp63 transformation related prot... NM_001127262.1 61.5% 64.2% (many diffs)
23 mouse 22061 Trp63 transformation related prot... NM_001127263.1 50.7% 49.5% (many diffs)
24 mouse 22061 Trp63 transformation related prot... NM_001127265.1 50.1% 48.8% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
2106
ORF length:
2040
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatgaa ttttgaaact tcacggtgtg ccaccctaca gtactgccct gacccttaca
121tccagcgttt cgtagaaacc ccagctcatt tctcttggaa agaaagttat taccgatcca
181ccatgtccca gagcacacag acaaatgaat tcctcagtcc agaggttttc cagcatatct
241gggattttct ggaacagcct atatgttcag ttcagcccat tgacttgaac tttgtggatg
301aaccatcaga agatggtgcg acaaacaaga ttgagattag catggactgt atccgcatgc
361aggactcgga cctgagtgac cccatgtggc cacagtacac gaacctgggg ctcctgaaca
421gcatggacca gcagattcag aacggctcct cgtccaccag tccctataac acagaccacg
481cgcagaacag cgtcacggcg ccctcgccct acgcacagcc cagctccacc ttcgatgctc
541tctctccatc acccgccatc ccctccaaca ccgactaccc aggcccgcac agtttcgacg
601tgtccttcca gcagtcgagc accgccaagt cggccacctg gacgtattcc actgaactga
661agaaactcta ctgccaaatt gcaaagacat gccccatcca gatcaaggtg atgaccccac
721ctcctcaggg agctgttatc cgcgccatgc ctgtctacaa aaaagctgag cacgtcacgg
781aggtggtgaa gcggtgcccc aaccatgagc tgagccgtga attcaacgag ggacagattg
841cccctcctag tcatttgatt cgagtagagg ggaacagcca tgcccagtat gtagaagatc
901ccatcacagg aagacagagt gtgctggtac cttatgagcc accccaggtt ggcactgaat
961tcacgacagt cttgtacaat ttcatgtgta acagcagttg tgttggaggg atgaaccgcc
1021gtccaatttt aatcattgtt actctggaaa ccagagatgg gcaagtcctg ggccgacgct
1081gctttgaggc ccggatctgt gcttgcccag gaagagacag gaaggcggat gaagatagca
1141tcagaaagca gcaagtttcg gacagtacaa agaacggtga tggtacgaag cgcccgtttc
1201gtcagaacac acatggtatc cagatgacat ccatcaagaa acgaagatcc ccagatgatg
1261aactgttata cttaccagtg aggggccgtg agacttatga aatgctgttg aagatcaaag
1321agtccctgga actcatgcag taccttcctc agcacacaat tgaaacgtac aggcaacagc
1381aacagcagca gcaccagcac ttacttcaga aacagacctc aatacagtct ccatcttcat
1441atggtaacag ctccccacct ctgaacaaaa tgaacagcat gaacaagctg ccttctgtga
1501gccagcttat caaccctcag cagcgcaacg ccctcactcc tacaaccatt cctgatggca
1561tgggagccaa cattcccatg atgggcaccc acatgccaat ggctggagac atgaatggac
1621tcagccccac ccaggcactc cctcccccac tctccatgcc atccacctcc cactgcacac
1681ccccacctcc gtatcccaca gattgcagca ttgtcagttt cttagcgagg ttgggctgtt
1741catcatgtct ggactatttc acgacccagg ggctgaccac catctatcag attgagcatt
1801actccatgga tgatctggca agtctgaaaa tccctgagca atttcgacat gcgatctgga
1861agggcatcct ggaccaccgg cagctccacg aattctcctc cccttctcat ctcctgcgga
1921ccccaagcag tgcctctaca gtcagtgtgg gctccagtga gacccggggt gagcgtgtta
1981ttgatgctgt gcgattcacc ctccgccaga ccatctcttt cccaccccga gatgagtgga
2041atgacttcaa ctttgacatg gatgctcgcc gcaataagca acagcgcatc aaagaggagg
2101gggagtgccc aactttcttg tacaaagtgg ttggtaagcc tatccctaac cctctcctcg
2161gtctcgattc tacgtagtaa tgagctagcg ctaaccggtg gcgcgttaag tcgacaatca
2221acctctggat ta

Download FASTA (ORF) (Full)

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