Construct: ORF ccsbBroad304_02223
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF015256.1_s304c1, BRDN0000411354
- Derived from:
- ccsbBroadEn_02223
- DNA Barcode:
- None
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- DZIP3 (9666)
Vector Information:
- Vector Backbone:
- pLX_304
- Pol II Cassette 1:
- PGK-BlastR
- Pol II Cassette 2:
- CMV-ccsbBroad304_02223
- Selection Marker:
- BlastR
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 9666 | DZIP3 | DAZ interacting zinc finger... | NM_014648.4 | 99.9% | 100% | 2907T>C |
| 2 | human | 9666 | DZIP3 | DAZ interacting zinc finger... | XM_005247914.4 | 99.9% | 100% | 2907T>C |
| 3 | human | 9666 | DZIP3 | DAZ interacting zinc finger... | XM_005247915.3 | 99.9% | 100% | 2907T>C |
| 4 | human | 9666 | DZIP3 | DAZ interacting zinc finger... | XM_005247916.3 | 99.9% | 100% | 2907T>C |
| 5 | human | 9666 | DZIP3 | DAZ interacting zinc finger... | XM_005247917.3 | 99.9% | 100% | 2907T>C |
| 6 | human | 9666 | DZIP3 | DAZ interacting zinc finger... | XM_005247918.3 | 99.9% | 100% | 2907T>C |
| 7 | human | 9666 | DZIP3 | DAZ interacting zinc finger... | XM_017007540.1 | 99.9% | 100% | 2907T>C |
| 8 | human | 9666 | DZIP3 | DAZ interacting zinc finger... | XM_005247919.4 | 82.9% | 82.9% | 1138_1139ins618;2289T>C |
| 9 | human | 9666 | DZIP3 | DAZ interacting zinc finger... | XR_924222.2 | 73.6% | (many diffs) | |
| 10 | human | 9666 | DZIP3 | DAZ interacting zinc finger... | XR_001740382.1 | 73.5% | (many diffs) | |
| 11 | mouse | 224170 | Dzip3 | DAZ interacting protein 3, ... | NM_001110017.1 | 85.9% | 83.2% | (many diffs) |
| 12 | mouse | 224170 | Dzip3 | DAZ interacting protein 3, ... | XM_006522089.1 | 83.5% | 80.3% | (many diffs) |
| 13 | mouse | 224170 | Dzip3 | DAZ interacting protein 3, ... | NM_027341.2 | 70.5% | 67.1% | (many diffs) |
| 14 | mouse | 224170 | Dzip3 | DAZ interacting protein 3, ... | XM_017316968.1 | 68.7% | 67.4% | (many diffs) |
| 15 | mouse | 224170 | Dzip3 | DAZ interacting protein 3, ... | XM_017316967.1 | 68.2% | 64.2% | (many diffs) |
| 16 | mouse | 224170 | Dzip3 | DAZ interacting protein 3, ... | XM_006522090.1 | 61.2% | 58.9% | (many diffs) |
| 17 | mouse | 224170 | Dzip3 | DAZ interacting protein 3, ... | XM_017316969.1 | 53.3% | 51.2% | (many diffs) |
| 18 | mouse | 224170 | Dzip3 | DAZ interacting protein 3, ... | XR_001781815.1 | 51.5% | (many diffs) | |
| 19 | mouse | 224170 | Dzip3 | DAZ interacting protein 3, ... | XR_001781814.1 | 42.1% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 3690
- ORF length:
- 3624
- Sequence:
-
1 ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag 61 ttggcatgga ttctctacca gatgaatttt ttgtgaggca tcctgctgtg gaggatcaga 121 ggaaggaaga aactgagaat aagctagaaa aatcatctgg tcaactgaac aaacaggaaa 181 atgacatacc tactgatctt gtccctgtta acctactatt agaagtgaag aagttattaa 241 atgcaattaa tactctacca aaaggtgtgg ttcctcacat taagaagttc ttacaagaag 301 atttttcctt ccaaactatg cagagagaag ttgcagctaa cagccagaat ggtgaggaaa 361 ttgttcctgc tttgacttta cgtttcttga ttacacagct agaagcagca cttaggaaca 421 ttcaagctgg caattatacc gcacaccaga ttaatattgg ttattatttg acattactgt 481 ttttatatgg agtagcactc actgaaagag gaaagaaaga ggattataca gaagctgaga 541 ataaatttct ggtgatgaag atgatgatcc aagaaaatga aatttgtgaa aactttatgt 601 ctttagttta ttttggacgt ggtttactgc gatgtgctca aaagagatat aatggaggac 661 tgctagaatt tcataaaagc ttacaagaaa ttggagacaa aaatgaccat tggtttgaca 721 tagatcctac agaagatgaa gatttaccta caacttttaa agatcttctt aataatttta 781 tcaagacaac tgaaagcaat ataatgaagc agacgatttg tagttaccta gattgtgaac 841 gatcttgtga agctgacatt ttgaagaaca ccagttataa gggatttttt cagttaatgt 901 gcagtaaaag ttgctgtgtt tatttccata aaatttgctg gaaaaagttc aagaatttaa 961 agtatccagg tgaaaatgat cagagtttta gtgggaaaaa atgtttgaag gaaggatgta 1021 caggtgacat ggtaaggatg ctgcaatgtg atgtacctgg aattgttaaa attttgtttg 1081 aagttgtgag aaaggatgaa tatatcacca ttgaaaattt aggagcaagt tatagaaagt 1141 tgatatctct gaaaataact gatactgata taagaccgaa gatcagttta aaatttaata 1201 caaaagatga aatgcctatc ttcaagcttg attataatta tttctatcat ctgcttcata 1261 taattattat ttctggtact gacattgttc gacaaatatt tgatgaggct atgccacctc 1321 ctcttttgaa aaaagagctt cttatacaca agaatgtgct ggaatcctac tacaaccatc 1381 tttggaccaa tcatcctttg ggtggatcat ggcatctgct ttatcctcct aacaaggagt 1441 taccgcaatc caaacagttt gacttatgcc tcctgttagc tcttataaaa catttaaatg 1501 tgttccctgc acccaaaaaa ggatggaata tggaaccgcc atcttctgac atctctaaat 1561 ctgcagacat cctgagactg tgcaaataca gggatatcct ccttagtgag attttgatga 1621 atggtctcac tgagtcacag ttcaattcaa tttggaaaaa agtttcagat attcttctgc 1681 gccttgggat gatgcaagag gatattgaca aagtgaagga gaatcccatt gagaatatct 1741 cccttgatta ccatcagcta tctgtctacc taggcatacc agtaccagaa atcatacaga 1801 ggatgttatc ctgctatcaa caaggaattg ctctacagtc aataacaggc agtcagcgta 1861 ttgaaataga agagttacag aatgaggaag aagaactaag tccacctctc atggagtaca 1921 atataaatgt gaaatcacac cctgagatac agtttgcaga aattaataaa gatgggacct 1981 caatacccag tgaatcttca acagaatctc ttaaagatct ccaggaagtt aagagtaaac 2041 aaaggaaaaa gaagaagact aagaataaaa agaataaaga ctcaaaagaa gaccaagtcc 2101 catatgtggt agaaaaggaa gagcagttga ggaaagaaca agcaaatcca cactcagtca 2161 gtagacttat aaaagatgat gcaagtgatg ttcaagagga ttctgcaatg gaagacaagt 2221 tctatagcct ggatgaattg catattctgg acatgataga gcagggctca gctggcaaag 2281 taactacaga ctatggagaa actgaaaagg aaaggcttgc tcgtcaaagg cagctttata 2341 aattgcacta tcagtgtgaa gatttcaaaa gacagttgag aacagtgact tttcggtggc 2401 aagaaaacca aatgcagatt aaaaagaaag acaaaattat cgcatctctt aatcaacaag 2461 ttgcttttgg aatcaataag gtttccaaat tacagcgtca aatccatgct aaagataatg 2521 aaatcaagaa ccttaaagag caactttcta tgaaaagatc tcagtgggaa atggaaaaac 2581 ataatctgga aagcacaatg aaaacatacg taagcaaact gaacgcagaa actagcagag 2641 ctttaacagc cgaggtgtat ttcttacagt gtcgtaggga ttttggtttg cttcatctag 2701 agcagactga aaaggaatgt ctcaatcagc ttgccagggt gactcacatg gcagcaagca 2761 acctagaatc acttcaatta aaggctgcgg tagacagttg gaatgccatt gtggcagatg 2821 ttagaaacaa gattgcattc ctcaggacac agtacaatga acaaataaac aaagtcaagc 2881 aaggatttgc cttgagtacc ttgcctccag tccagcttcc tcctccacca cccagtcctg 2941 agatactgat gcagcagttc ttaggaagac cccttgtgaa agaatctttc tttagaccca 3001 tacttactgt tcctcaaatg cctgcagttt gcccgggagt cgtctctgca actggccaac 3061 ctagagcccc cctgatgact ggcatagcct gggctctgcc agcgcctgtg ggagacgctg 3121 tgcctcccag tgcaggtctg cggagtgatc cctccatcat gaattgggag agaattacag 3181 acaggctgaa aactgccttt ccacagcaaa ccagaaagga acttacagat ttcttacgga 3241 aattgaagga tgcttatgga aaatccttgt ctgaactgac atttgatgaa attgtttgca 3301 agatttccca gtttattgac cccaaaaagt ctcagagtca aggaaaatca gtgtcaaatg 3361 ttaattgtgt ttcacctagt cattctccat cacagcctga tgctgcccag cccccaaaac 3421 cagcctggag gccactcact tcacagggtc ctgccacatg ggaaggagcc agtaatccag 3481 atgaggaaga ggaagaagaa gagccttgtg tgatctgtca tgagaatctg tctccagaaa 3541 atctttcagt tttgccttgc gctcacaaat tccatgctca gtgcattaga ccatggttga 3601 tgcaacaggg gacatgtcca acgtgcagac tccacgtttt gctaccagaa gaattccctg 3661 gtcaccccag ccggcagttg cccaagatct gcccaacttt cttgtacaaa gtggttggta 3721 agcctatccc taaccctctc ctcggtctcg attctacgta gtaatgagct agcgctaacc 3781 ggtggcgcgt taagtcgaca atcaacctct ggatta