Transcript: Human XM_005247919.4

PREDICTED: Homo sapiens DAZ interacting zinc finger protein 3 (DZIP3), transcript variant X8, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
DZIP3 (9666)
Length:
4861
CDS:
370..3378

Additional Resources:

NCBI RefSeq record:
XM_005247919.4
NBCI Gene record:
DZIP3 (9666)

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_005247919.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000034244 CGGAAATTGAAGGATGCTTAT pLKO.1 2923 CDS 100% 10.800 7.560 N DZIP3 n/a
2 TRCN0000034245 CCACCTCTCATGGAGTACAAT pLKO.1 1588 CDS 100% 5.625 3.938 N DZIP3 n/a
3 TRCN0000034248 CCTCACATTAAGAAGTTCTTA pLKO.1 577 CDS 100% 5.625 3.938 N DZIP3 n/a
4 TRCN0000034247 CGATTTGTAGTTACCTAGATT pLKO.1 1118 CDS 100% 5.625 3.938 N DZIP3 n/a
5 TRCN0000034246 CCATACTTACTGTTCCTCAAA pLKO.1 2684 CDS 100% 4.950 3.465 N DZIP3 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_005247919.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_02223 pDONR223 100% 82.9% 82.9% None 1138_1139ins618;2289T>C n/a
2 ccsbBroad304_02223 pLX_304 0% 82.9% 82.9% V5 1138_1139ins618;2289T>C n/a
3 TRCN0000480525 AAGGTCATTAATAATACAACTAGC pLX_317 10.1% 82.9% 82.9% V5 1138_1139ins618;2289T>C n/a
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