Construct: ORF ccsbBroad304_02278

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF017509.1_s304c1, BRDN0000408353
Derived from:
ccsbBroadEn_02278
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
THRAP3 (9967)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_02278
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 9967 THRAP3 thyroid hormone receptor as... NM_001321471.2 100% 100%
2 human 9967 THRAP3 thyroid hormone receptor as... NM_005119.4 100% 100%
3 human 9967 THRAP3 thyroid hormone receptor as... NM_001321473.2 99.8% 99.8% 2502_2503insCAG
4 human 9967 THRAP3 thyroid hormone receptor as... XR_002958230.1 62.1% 1_211del;2327_2518del;3269_4611del
5 human 9967 THRAP3 thyroid hormone receptor as... XR_002958231.1 62% (many diffs)
6 human 9967 THRAP3 thyroid hormone receptor as... XM_024451301.1 59.4% 59.4% 0_1ins1161
7 human 9967 THRAP3 thyroid hormone receptor as... XM_024451302.1 59.4% 59.4% 0_1ins1161
8 mouse 230753 Thrap3 thyroid hormone receptor as... NM_146153.3 88.7% 92.7% (many diffs)
9 mouse 230753 Thrap3 thyroid hormone receptor as... XM_006503041.3 88.7% 92.7% (many diffs)
10 mouse 230753 Thrap3 thyroid hormone receptor as... XM_011240503.2 88.7% 92.7% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
2934
ORF length:
2865
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcaccat gtcaaaaaca aacaaatcca agtctggatc tcgctcttct cgctcaagat
121ctgcatcaag atctcgttct cgttcatttt cgaagtctcg gtcccgaagc cgatctctct
181ctcgttcaag gaagcgcagg ctgagttcta ggtctcgttc cagatcatat tctccagctc
241ataacagaga aagaaaccac ccaagagtat atcagaatcg ggatttccga ggtcacaaca
301gaggctatag aaggccctat tatttccgtg ggcgtaacag aggcttttat ccatggggcc
361aatataaccg aggaggctat ggaaactacc gctcaaattg gcagaattac cggcaagcat
421acagtcctcg tcgaggccgt tcaagatccc ggtccccaaa gagaaggtcc ccttcaccaa
481ggtccaggag ccattctaga aactctgata agtcgtcttc tgaccggtca aggcgctcct
541catcctcccg ttcttcctcc aaccatagcc gagttgaatc ttctaagcgc aagtctgcaa
601aggagaaaaa gtcctcttct aaggatagcc ggccatctca ggctgccggg gataaccagg
661gagatgaggc caaggagcag acattctctg gaggcacctc tcaagataca aaagcatctg
721agagctcgaa gccatggcca gatgccacct acggcactgg ttctgcatca cgggcctcag
781cagtttctga gctgagtcct cgggagcgaa gcccagctct caaaagcccc ctccagtctg
841tggtggtgag gcggcggtca ccccgtccta gccccgtgcc aaaacctagt cctccacttt
901ccagcacatc ccagatgggc tcaactctgc cgagtggtgc cgggtatcag tctgggacac
961accaaggtca gttcgaccat ggttctgggt ccctgagtcc atccaaaaag agccctgtgg
1021gtaagagtcc accatccact ggctccacat atggctcatc tcagaaggag gagagtgctg
1081cttcaggagg agcagcctat acaaagaggt atctagaaga gcagaagaca gagaatggaa
1141aagataagga acagaaacaa acaaataccg ataaagaaaa aataaaagag aaagggagct
1201tctctgacac aggcttgggt gatggaaaaa tgaaatctga ttcttttgct cccaaaactg
1261attctgagaa gccttttcgg ggcagtcagt ctcccaaaag gtataagctc cgagatgact
1321ttgagaagaa gatggctgac ttccacaagg aggagatgga tgatcaagat aaggacaaag
1381ctaagggaag aaaggaatct gagtttgatg atgaacccaa atttatgtct aaagtcatag
1441gtgcaaacaa aaaccaggag gaggagaagt caggcaaatg ggagggcctg gtatatgcac
1501ctccagggaa ggaaaagcag agaaaaacag aggagctgga ggaggagtct ttcccagaga
1561gatccaaaaa ggaagatcgg ggcaagagaa gcgaaggtgg gcacaggggc tttgtgcctg
1621agaagaattt ccgagtgact gcttataaag cagtccagga gaaaagctca tcacctcccc
1681caagaaagac ctctgagagc cgagacaagc tgggagcgaa aggagatttt cccacaggaa
1741agtcttcctt ttccattact cgagaggcac aggtcaatgt ccggatggac tcttttgatg
1801aggacctcgc acgacccagt ggcttattgg ctcaggaacg caagctttgc cgagatctag
1861tccatagcaa caaaaaggaa caggagtttc gttccatttt ccagcacata caatcagctc
1921agtctcagcg tagcccctca gaactgtttg cccaacatat agtgaccatt gttcaccatg
1981ttaaagagca tcactttggg tcctcaggaa tgacattaca tgaacgcttt actaaatacc
2041taaagagagg aactgagcag gaggcagcca aaaacaagaa aagcccagag atacacagga
2101gaatagacat ttcccccagt acattcagaa aacatggttt ggctcatgat gaaatgaaaa
2161gtccccggga acctggctac aaggctgagg gaaaatacaa agatgatcct gttgatctcc
2221gccttgatat tgaacgtcgt aaaaaacata aggagagaga tcttaaacga ggtaaatcga
2281gagaatcagt ggattcccga gactccagtc actcaaggga aaggtcagct gaaaaaacag
2341agaaaactca taaaggatca aagaaacaga agaagcatcg gagagcaaga gacaggtcca
2401gatcctcctc ctcttcctcc cagtcatctc actcctacaa agcagaagag tacactgaag
2461agacagagga aagagaggag agcaccacgg gctttgacaa atcaagactg gggaccaaag
2521actttgtggg tccaagtgaa agaggaggtg gcagagctcg aggaaccttt cagtttcgag
2581ccagaggaag aggctggggc agaggcaact actctgggaa caataacaac aacagcaaca
2641acgattttca aaaaagaaac cgggaagagg agtgggaccc agagtacaca cccaaaagca
2701agaagtatta cttgcatgat gaccgtgaag gcgaaggcag tgacaagtgg gtgagccggg
2761gccggggccg aggagccttt cctcggggtc ggggccggtt catgttccgg aaatcaagta
2821ccagccccaa gtgggcccat gacaagttca gtggggagga aggggagatt gaagacgacg
2881agagtgggac agagaaccga gaagagaagg acaatataca gcccacaacc gagttgccaa
2941ctttcttgta caaagtggtt ggtaagccta tccctaaccc tctcctcggt ctcgattcta
3001cgtagtaatg agctagcgct aaccggtggc gcgttaagtc gacaatcaac ctctggatta

Download FASTA (ORF) (Full)

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