Construct: ORF ccsbBroad304_02337
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF014712.1_s304c1, BRDN0000409646
- Derived from:
- ccsbBroadEn_02337
- DNA Barcode:
- None
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- SLC25A13 (10165)
Vector Information:
- Vector Backbone:
- pLX_304
- Pol II Cassette 1:
- PGK-BlastR
- Pol II Cassette 2:
- CMV-ccsbBroad304_02337
- Selection Marker:
- BlastR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 10165 | SLC25A13 | solute carrier family 25 me... | NM_014251.3 | 100% | 100% | |
| 2 | human | 10165 | SLC25A13 | solute carrier family 25 me... | NM_001160210.1 | 99.8% | 99.8% | 930_932delGCA |
| 3 | human | 10165 | SLC25A13 | solute carrier family 25 me... | XM_006715831.4 | 98% | 97.6% | (many diffs) |
| 4 | human | 10165 | SLC25A13 | solute carrier family 25 me... | XM_017011663.1 | 97.1% | 96.6% | (many diffs) |
| 5 | human | 10165 | SLC25A13 | solute carrier family 25 me... | XM_011515727.3 | 64.3% | 62.9% | (many diffs) |
| 6 | human | 10165 | SLC25A13 | solute carrier family 25 me... | XR_001744525.2 | 62.4% | 1_171del;1483_1557del;2272_3245del | |
| 7 | human | 10165 | SLC25A13 | solute carrier family 25 me... | NR_027662.2 | 60.7% | 1_142del;353_354ins116;2052_3025del | |
| 8 | human | 10165 | SLC25A13 | solute carrier family 25 me... | XM_017011664.2 | 57.9% | 57.9% | 0_1ins852 |
| 9 | human | 10165 | SLC25A13 | solute carrier family 25 me... | XM_017011665.1 | 57.9% | 57.9% | 0_1ins852 |
| 10 | human | 10165 | SLC25A13 | solute carrier family 25 me... | XR_002956405.1 | 53% | (many diffs) | |
| 11 | mouse | 50799 | Slc25a13 | solute carrier family 25 (m... | NM_001177572.1 | 88.8% | 95.5% | (many diffs) |
| 12 | mouse | 50799 | Slc25a13 | solute carrier family 25 (m... | NM_015829.3 | 88.7% | 95.4% | (many diffs) |
| 13 | mouse | 50799 | Slc25a13 | solute carrier family 25 (m... | XM_006505136.3 | 67.3% | 70.1% | (many diffs) |
| 14 | mouse | 50799 | Slc25a13 | solute carrier family 25 (m... | XM_006505137.3 | 58.6% | 61.9% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 2091
- ORF length:
- 2025
- Sequence:
-
1 ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag 61 ttggcatggc ggccgccaag gtggctttaa ccaagagagc agatccagct gagcttagaa 121 caatattttt gaagtatgca agcattgaga aaaacggtga atttttcatg tcccccaatg 181 actttgtcac tcgatacttg aacatttttg gagaaagcca gcctaatcca aagactgtgg 241 aacttttaag tggagtggtg gatcagacca aagatggatt aatatctttt caagaatttg 301 ttgcctttga atctgtcctg tgtgcccctg atgctttgtt tatggtagcc tttcagctgt 361 ttgacaaagc tggcaaagga gaagtaactt ttgaggatgt taagcaagtt tttggacaga 421 ccacaattca tcaacatatt ccatttaact gggattcaga atttgtgcaa ctacattttg 481 gaaaagaaag aaaaagacac ctgacatatg cggaatttac tcagttttta ttggaaatac 541 aactggagca cgcaaagcaa gcctttgtgc aacgggacaa tgctaggact gggagagtca 601 cagccatcga cttccgagac atcatggtca ccatccgccc ccatgtcttg actccttttg 661 tagaagaatg tctagtagct gctgctggag gtaccacatc ccatcaagtt agtttctcct 721 attttaatgg atttaattcg ctccttaaca acatggaact cattagaaag atctatagca 781 ctctggctgg caccaggaaa gatgttgaag tgactaagga ggagtttgtt ctggcagctc 841 agaaatttgg tcaggttaca cccatggaag ttgacatctt gtttcagtta gcagatttat 901 atgagccaag gggacgtatg accttagcag acattgaacg gattgctcct ctggaagagg 961 gaactctgcc ctttaacttg gctgaggccc agaggcagaa ggcctcaggt gattcagctc 1021 gaccagttct tctacaagtt gcagagtcgg cctacaggtt tggtctgggt tctgttgctg 1081 gagctgttgg agccactgct gtgtatccta tcgatcttgt aaaaactcga atgcagaacc 1141 aacgatcaac tggctctttt gtgggagaac tcatgtataa aaacagcttt gactgtttta 1201 agaaagtgct acgctatgaa ggcttctttg gactgtatag aggtctgttg ccacagttat 1261 tgggagttgc cccagagaag gccataaaac ttacagtgaa cgattttgtg agggataaat 1321 ttatgcacaa agatggttcg gtcccacttg cagcagaaat tcttgctgga ggctgcgctg 1381 gaggctccca ggtgattttc acaaatcctt tagaaatcgt caagatccgt ttgcaagtgg 1441 caggagaaat caccactggt cctcgagtca gtgctctgtc tgtcgtgcgg gacctggggt 1501 tttttgggat ctacaagggt gccaaagcat gctttctgcg ggacattcct ttctcggcca 1561 tctactttcc gtgctatgct catgtgaagg cttcctttgc aaatgaagat gggcaggtta 1621 gcccaggaag cctgctctta gctggtgcca tagctggtat gcctgcagca tctttagtga 1681 cccctgctga tgttatcaag acgagattac aggtggctgc ccgggctggc caaaccactt 1741 acagcggagt gatagactgc tttagaaaga tactgcgtga agaaggacca aaagctctgt 1801 ggaagggagc tggtgctcgt gtatttcgat cctcacccca gtttggtgta actttgctga 1861 cttacgaatt gctacagcga tggttctaca ttgattttgg aggagtaaaa cccatgggat 1921 cagagccagt tcctaaatcc aggatcaacc tgcctgcccc gaatcctgat cacgttgggg 1981 gctacaaact ggcagttgct acatttgcag ggattgaaaa caaatttgga ctttacctac 2041 ctctcttcaa gccatcagta tctacctcaa aggctattgg tggaggccca tacccaactt 2101 tcttgtacaa agtggttggt aagcctatcc ctaaccctct cctcggtctc gattctacgt 2161 agtaatgagc tagcgctaac cggtggcgcg ttaagtcgac aatcaacctc tggatta