Construct: ORF ccsbBroad304_02362

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF005620.1_s304c1, BRDN0000399717
Derived from:
ccsbBroadEn_02362
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
STX6 (10228)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_02362
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 10228 STX6 syntaxin 6 NM_005819.6 100% 100%
2 human 10228 STX6 syntaxin 6 NM_001286210.1 60.3% 60.3% 0_1ins303
3 human 10228 STX6 syntaxin 6 XM_017000007.1 60.3% 60.3% 0_1ins303
4 mouse 58244 Stx6 syntaxin 6 NM_021433.3 90.8% 94.5% (many diffs)
5 mouse 58244 Stx6 syntaxin 6 XM_006529766.3 83.8% 82.8% (many diffs)
6 mouse 58244 Stx6 syntaxin 6 XM_017321868.1 53.7% 56% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
831
ORF length:
765
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatgtc catggaggac cccttctttg tggtgaaagg agaggtacag aaagcagtca
121acactgccca gggattgttt cagagatgga cagagctcct ccaggacccc tccacagcaa
181caagggaaga aatcgactgg accaccaacg agctgagaaa taacctccgg agcatagagt
241gggatctaga ggaccttgat gaaaccatca gcatagttga agcaaatcct agaaaattta
301accttgatgc aactgaattg agtataagaa aagccttcat tacaagtact cggcaagttg
361tcagggacat gaaagatcag atgtcaactt catctgtgca ggcattagct gaaagaaaaa
421atagacaggc actgctggga gacagtggca gccagaactg gagcactgga acaacagata
481aatatgggcg tctggaccga gagctccaga gagccaattc tcatttcatt gaggagcagc
541aggcacagca gcagttgatc gtggaacagc aggatgagca gttggagctg gtctctggca
601gcatcggggt gctgaagaac atgtcccagc gcatcggagg ggagctggag gaacaggcag
661ttatgttgga agatttctct cacgaattgg agagcactca gtcccggctg gacaatgtga
721tgaagaaact tgcaaaagta tctcatatga ccagtgatcg gcgccaatgg tgtgccatag
781ccatcctctt tgcagtcctg ttggttgtgc tcatcctctt cttagtgctg tgcccaactt
841tcttgtacaa agtggttggt aagcctatcc ctaaccctct cctcggtctc gattctacgt
901agtaatgagc tagcgctaac cggtggcgcg ttaagtcgac aatcaacctc tggatta

Download FASTA (ORF) (Full)