Construct: ORF ccsbBroad304_02517

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF011910.1_s304c1, BRDN0000407846
Derived from:
ccsbBroadEn_02517
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
RFPL2 (10739)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_02517
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 10739 RFPL2 ret finger protein like 2 NM_001159545.2 100% 100%
2 human 10739 RFPL2 ret finger protein like 2 NM_001159546.2 100% 100%
3 human 10739 RFPL2 ret finger protein like 2 NM_001364984.1 100% 100%
4 human 10739 RFPL2 ret finger protein like 2 NM_001364985.1 100% 100%
5 human 10738 RFPL3 ret finger protein like 3 NM_006604.2 97.4% 94.4% (many diffs)
6 human 5988 RFPL1 ret finger protein like 1 XM_011530298.3 95.4% 90.6% (many diffs)
7 human 5988 RFPL1 ret finger protein like 1 XM_011530299.3 95.4% 90.6% (many diffs)
8 human 5988 RFPL1 ret finger protein like 1 XM_017028900.2 95.4% 90.6% (many diffs)
9 human 5988 RFPL1 ret finger protein like 1 XM_017028902.2 95.4% 90.6% (many diffs)
10 human 10739 RFPL2 ret finger protein like 2 NM_001364982.1 92.9% 92.9% 1_66del
11 human 10738 RFPL3 ret finger protein like 3 NM_001098535.1 88.5% 85.8% (many diffs)
12 human 5988 RFPL1 ret finger protein like 1 NM_021026.2 86.7% 82.3% (many diffs)
13 human 10739 RFPL2 ret finger protein like 2 NM_001098527.3 76.1% 76.1% 1_270del
14 human 10739 RFPL2 ret finger protein like 2 XM_011529832.2 76.1% 76.1% 1_270del
15 human 10739 RFPL2 ret finger protein like 2 NM_001364983.1 69.2% 69.2% 1_384del
16 human 10739 RFPL2 ret finger protein like 2 NM_001364986.1 69.2% 69.2% 1_384del
17 human 10739 RFPL2 ret finger protein like 2 XM_011529826.2 69.2% 69.2% 1_384del
18 human 10739 RFPL2 ret finger protein like 2 XM_011529827.3 69.2% 69.2% 1_384del
19 human 10739 RFPL2 ret finger protein like 2 XM_011529828.2 69.2% 69.2% 1_384del
20 human 10738 RFPL3 ret finger protein like 3 XM_017028534.1 41.3% 33.9% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
930
ORF length:
864
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatggc tgcactcttc caagaagcaa gcagctgtcc cgtctgctca gactatctgg
121aaaaaccaat gtccctggag tgtggatgcg ccgtctgcct caagtgcatt aattcactgc
181agaaggagcc ccatggggag gatctacttt gctgttgctc ttccatggtc tctcggaaga
241acaaaatcag gcgcaatcgg cagctagaga ggctggcttc ccacatcaag gaactggagc
301ccaagctgaa gaagattctg cagatgaacc caaggatgcg gaagttccaa gtggatatga
361ccttggatgc caacacagcc aacaacttcc tcctcatttc tgacgacctc aggagcgtcc
421gaagtgggcg catcagacag aatcggcaag accttgccga gagatttgac gtgtccgttt
481gcatcctggg ctcccctcgc tttacctgtg gccgccactg ctgggaggtg gacgtgggaa
541caagcacaga atgggacctg ggagtctgca gagaatctgt tcaccgcaaa gggaggatcc
601agctgaccac agagcttgga ttctggactg tgagtttgag ggatggaggc cgcctctctg
661ccaccacggt gccgctgact ttcctcttcg tagaccgcaa gttacagcga gtggggattt
721ttctggatat gggcatgcag aacgtttcct tttttgatgc tgaaagtggt tcccatgtct
781atacattcag gagcgtatct gctgaggagc cattgcgccc atttttggct ccttcagttc
841cacctaatgg tgatcaaggt gtcttgagca tctgtccttt gatgaactca ggcactactg
901atgctccagt ccgtcctggg gaggccaaat acccaacttt cttgtacaaa gtggttggta
961agcctatccc taaccctctc ctcggtctcg attctacgta gtaatgagct agcgctaacc
1021ggtggcgcgt taagtcgaca atcaacctct ggatta

Download FASTA (ORF) (Full)