Construct: ORF ccsbBroad304_02833

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF015667.1_s304c1, BRDN0000405344
Derived from:
ccsbBroadEn_02833
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
CADM1 (23705)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_02833
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 23705 CADM1 cell adhesion molecule 1 NM_014333.4 100% 100%
2 human 23705 CADM1 cell adhesion molecule 1 NM_001301044.2 97.5% 97.5% 1078_1110del
3 human 23705 CADM1 cell adhesion molecule 1 XM_005271494.3 95.4% 94.5% (many diffs)
4 human 23705 CADM1 cell adhesion molecule 1 NM_001301045.2 94.8% 94.3% (many diffs)
5 human 23705 CADM1 cell adhesion molecule 1 NM_001301043.2 93.8% 93.8% 1076_1162del
6 human 23705 CADM1 cell adhesion molecule 1 NM_001098517.2 93.6% 93.6% 993_994ins84
7 human 23705 CADM1 cell adhesion molecule 1 XM_017017457.2 84.5% 83.4% (many diffs)
8 mouse 54725 Cadm1 cell adhesion molecule 1 NM_018770.3 92.2% 97.9% (many diffs)
9 mouse 54725 Cadm1 cell adhesion molecule 1 NM_207675.2 89.9% 95.6% (many diffs)
10 mouse 54725 Cadm1 cell adhesion molecule 1 NM_207676.2 87.7% 92.5% (many diffs)
11 mouse 54725 Cadm1 cell adhesion molecule 1 XM_006510497.3 87.3% 92.3% (many diffs)
12 mouse 54725 Cadm1 cell adhesion molecule 1 NM_001310841.1 86.5% 91.9% (many diffs)
13 mouse 54725 Cadm1 cell adhesion molecule 1 NM_001025600.1 85.9% 91.6% (many diffs)
14 mouse 54725 Cadm1 cell adhesion molecule 1 XM_017313489.1 60.9% 64.2% (many diffs)
15 mouse 54725 Cadm1 cell adhesion molecule 1 XM_017313487.1 58.5% 61.7% (many diffs)
16 mouse 54725 Cadm1 cell adhesion molecule 1 XM_017313488.1 58.5% 61.7% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
1395
ORF length:
1326
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcaccat ggcgagtgta gtgctgccga gcggatccca gtgtgcggcg gcagcggcgg
121cggcggcgcc tcccgggctc cggctccggc ttctgctgtt gctcttctcc gccgcggcac
181tgatccccac aggtgatggg cagaatctgt ttacgaaaga cgtgacagtg atcgagggag
241aggttgcgac catcagttgc caagtcaata agagtgacga ctctgtgatt cagctactga
301atcccaacag gcagaccatt tatttcaggg acttcaggcc tttgaaggac agcaggtttc
361agttgctgaa tttttctagc agtgaactca aagtatcatt gacaaacgtc tcaatttctg
421atgaaggaag atacttttgc cagctctata ccgatccccc acaggaaagt tacaccacca
481tcacagtcct ggtcccacca cgtaatctga tgatcgatat ccagaaagac actgcggtgg
541aaggtgagga gattgaagtc aactgcactg ctatggccag caagccagcc acgactatca
601ggtggttcaa agggaacaca gagctaaaag gcaaatcgga ggtggaagag tggtcagaca
661tgtacactgt gaccagtcag ctgatgctga aggtgcacaa ggaggacgat ggggtcccag
721tgatctgcca ggtggagcac cctgcggtca ctggaaacct gcagacccag cggtatctag
781aagtacagta taagcctcaa gtgcacattc agatgactta tcctctacaa ggcttaaccc
841gggaagggga cgcgcttgag ttaacatgtg aagccatcgg gaagccccag cctgtgatgg
901taacttgggt gagagtcgat gatgaaatgc ctcaacacgc cgtactgtct gggcccaacc
961tgttcatcaa taacctaaac aaaacagata atggtacata ccgctgtgaa gcttcaaaca
1021tagtggggaa agctcactcg gattatatgc tgtatgtata cgatcccccc acaactatcc
1081ctcctcccac aacaaccacc accaccacca ccaccaccac caccaccatc cttaccatca
1141tcacagattc ccgagcaggt gaagaaggct cgatcagggc agtggatcat gccgtgatcg
1201gtggcgtcgt ggcggtggtg gtgttcgcca tgctgtgctt gctcatcatt ctggggcgct
1261attttgccag acataaaggt acatacttca ctcatgaagc caaaggagcc gatgacgcag
1321cagacgcaga cacagctata atcaatgcag aaggaggaca gaacaactcc gaagaaaaga
1381aagagtactt catcttgcca actttcttgt acaaagtggt tggtaagcct atccctaacc
1441ctctcctcgg tctcgattct acgtagtaat gagctagcgc taaccggtgg cgcgttaagt
1501cgacaatcaa cctctggatt a

Download FASTA (ORF) (Full)