Construct: ORF ccsbBroad304_02983

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF017480.1_s304c1, BRDN0000405516
Derived from:
ccsbBroadEn_02983
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
NPTN (27020)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_02983
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 27020 NPTN neuroplastin NM_017455.4 100% 100%
2 human 27020 NPTN neuroplastin NM_001161364.2 98.5% 98.5% 765_766insGATGATGAACCA
3 human 27020 NPTN neuroplastin XM_024449899.1 76% 71.7% (many diffs)
4 human 27020 NPTN neuroplastin XM_024449900.1 74.9% 70.6% (many diffs)
5 human 27020 NPTN neuroplastin NM_012428.4 70.8% 70.6% 92_439del
6 human 27020 NPTN neuroplastin NM_001161363.2 69.8% 69.5% 92_439del;1113_1114insGATGATGAACCA
7 human 27020 NPTN neuroplastin XM_011521452.3 64.2% 64% 92_439del;1116_1116delCins79
8 human 27020 NPTN neuroplastin XR_001751222.2 41.9% (many diffs)
9 human 27020 NPTN neuroplastin XR_001751221.2 41.8% 1_32del;798_890del;972_2023del
10 human 27020 NPTN neuroplastin XR_001751223.2 39.6% 1_32del;799_1003del;1084_2135del
11 human 27020 NPTN neuroplastin XR_001751219.1 35.3% (many diffs)
12 human 27020 NPTN neuroplastin XR_001751217.1 35.2% (many diffs)
13 human 27020 NPTN neuroplastin XR_001751220.1 33.6% (many diffs)
14 human 27020 NPTN neuroplastin XR_001751216.1 32.4% (many diffs)
15 mouse 20320 Nptn neuroplastin NM_009145.2 91.1% 93.2% (many diffs)
16 mouse 20320 Nptn neuroplastin NM_001293673.1 89.7% 91.8% (many diffs)
17 mouse 20320 Nptn neuroplastin XM_006510882.1 64.7% 65.8% (many diffs)
18 mouse 20320 Nptn neuroplastin XM_006510883.1 64.7% 65.8% (many diffs)
19 mouse 20320 Nptn neuroplastin XM_006510884.1 63.7% 64.8% (many diffs)
20 mouse 20320 Nptn neuroplastin XM_017313224.1 63.7% 64.8% (many diffs)
21 mouse 20320 Nptn neuroplastin XM_006510885.2 59.4% 58.2% (many diffs)
22 mouse 20320 Nptn neuroplastin XM_006510886.2 58.8% 59.2% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
915
ORF length:
846
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcaccat gtcgggttcg tcgctgccca gcgccctggc cctctcgctg ttgctggtct
121ctggctccct cctcccaggg ccaggcgccg ctcagaacga gccaaggatt gtcaccagtg
181aagaggtcat tattcgagac agccctgttc tccctgtcac cctgcagtgt aacctcacct
241ccagctctca cacccttaca tacagctact ggacaaagaa tggggtggaa ctgagtgcca
301ctcgtaagaa tgccagcaac atggagtaca ggatcaataa gccgagagct gaggattcag
361gcgaatacca ctgcgtatat cactttgtca gcgctcctaa agcaaacgcc accattgaag
421tgaaagccgc tcctgacatc actggccata aacggagtga gaacaagaat gaagggcagg
481atgccactat gtattgcaag tcagttggct acccccaccc agactggata tggcgcaaga
541aggagaacgg gatgcccatg gacattgtca atacctctgg ccgcttcttc atcatcaaca
601aggaaaatta cactgagttg aacattgtga acctgcagat cacggaagac cctggcgagt
661atgaatgtaa tgccaccaac gccattggct ccgcctctgt tgtcactgtc ctcagggtgc
721ggagccacct ggccccactc tggcctttct tgggaattct ggctgaaatt atcatccttg
781tggtgatcat tgttgtgtat gagaagagga agaggccaga tgaggttcct gacgatgatg
841aaccagctgg accaatgaaa accaactcta ccaacaatca caaagataaa aacttgcgcc
901agagaaacac aaatttgcca actttcttgt acaaagtggt tggtaagcct atccctaacc
961ctctcctcgg tctcgattct acgtagtaat gagctagcgc taaccggtgg cgcgttaagt
1021cgacaatcaa cctctggatt a

Download FASTA (ORF) (Full)