Transcript: Human XR_001751217.1

PREDICTED: Homo sapiens neuroplastin (NPTN), transcript variant X2, misc_RNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
NPTN (27020)
Length:
2401
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
XR_001751217.1
NBCI Gene record:
NPTN (27020)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XR_001751217.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000312662 GCGAATACCACTGCGTATATC pLKO_005 703 3UTR 100% 13.200 18.480 N NPTN n/a
2 TRCN0000331165 GGCGAATACCACTGCGTATAT pLKO_005 702 3UTR 100% 13.200 18.480 N NPTN n/a
3 TRCN0000331095 GTGATCTAGCCAGGTACATTT pLKO_005 1505 3UTR 100% 13.200 18.480 N NPTN n/a
4 TRCN0000344928 AGGCGAATACCACTGCGTATA pLKO_005 701 3UTR 100% 10.800 15.120 N NPTN n/a
5 TRCN0000061120 GTCGCCCATGTCAGAAACTAA pLKO.1 167 3UTR 100% 5.625 4.500 N NPTN n/a
6 TRCN0000344926 ACCAGTGAAGAGGTCATTATT pLKO_005 516 3UTR 100% 15.000 10.500 N NPTN n/a
7 TRCN0000344927 TGTCTAAAGCATGCCTTATTT pLKO_005 1468 3UTR 100% 15.000 10.500 N NPTN n/a
8 TRCN0000247863 CACCAGTGAAGAGGTCATTAT pLKO_005 515 3UTR 100% 13.200 9.240 N Nptn n/a
9 TRCN0000296825 CACCAGTGAAGAGGTCATTAT pLKO_005 515 3UTR 100% 13.200 9.240 N NPTN n/a
10 TRCN0000061121 CATGGAGTACAGGATCAATAA pLKO.1 662 3UTR 100% 13.200 9.240 N NPTN n/a
11 TRCN0000193073 CATGGAGTACAGGATCAATAA pLKO.1 662 3UTR 100% 13.200 9.240 N Nptn n/a
12 TRCN0000247865 CATGGAGTACAGGATCAATAA pLKO_005 662 3UTR 100% 13.200 9.240 N Nptn n/a
13 TRCN0000291393 CATGGAGTACAGGATCAATAA pLKO_005 662 3UTR 100% 13.200 9.240 N NPTN n/a
14 TRCN0000061119 CCTGGCGAGTATGAATGTAAT pLKO.1 993 3UTR 100% 13.200 9.240 N NPTN n/a
15 TRCN0000291319 CCTGGCGAGTATGAATGTAAT pLKO_005 993 3UTR 100% 13.200 9.240 N NPTN n/a
16 TRCN0000061122 CTACCAACAATCACAAAGATA pLKO.1 1303 3UTR 100% 5.625 3.938 N NPTN n/a
17 TRCN0000174908 GTATGAATGTAATGCCACCAA pLKO.1 1001 3UTR 100% 2.640 1.848 N Nptn n/a
18 TRCN0000061118 GCGTGAGTGTGCTGAGAATAA pLKO.1 352 3UTR 100% 13.200 7.920 N NPTN n/a
19 TRCN0000247866 TCATCCTTGTGGTGATCATTG pLKO_005 1114 3UTR 100% 10.800 6.480 N Nptn n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XR_001751217.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_02983 pDONR223 100% 35.2% None (many diffs) n/a
2 ccsbBroad304_02983 pLX_304 0% 35.2% V5 (many diffs) n/a
3 TRCN0000469270 TTACCGGAATGATGAGATGCCCCT pLX_317 48.2% 35.2% V5 (many diffs) n/a
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