Construct: ORF ccsbBroad304_03094

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF007125.1_s304c1, BRDN0000461483
Derived from:
ccsbBroadEn_03094
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
ZDHHC1 (29800)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_03094
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 29800 ZDHHC1 zinc finger DHHC-type conta... NM_013304.3 100% 100%
2 human 29800 ZDHHC1 zinc finger DHHC-type conta... XM_024450245.1 100% 100%
3 human 29800 ZDHHC1 zinc finger DHHC-type conta... XM_006721185.2 93.9% 91% (many diffs)
4 human 29800 ZDHHC1 zinc finger DHHC-type conta... NM_001323627.2 89.5% 69% (many diffs)
5 human 29800 ZDHHC1 zinc finger DHHC-type conta... XM_024450246.1 89.4% 77.3% 1042_1043ins104;1352_1407del
6 human 29800 ZDHHC1 zinc finger DHHC-type conta... XM_024450247.1 89% 89% 1010_1011ins159
7 human 29800 ZDHHC1 zinc finger DHHC-type conta... XM_011523060.1 82.4% 82.4% 0_1ins255
8 human 29800 ZDHHC1 zinc finger DHHC-type conta... XM_024450248.1 73.4% 71.9% 1042_1043ins124;1068_1069ins263
9 mouse 70796 Zdhhc1 zinc finger, DHHC domain co... NM_175160.3 76% 68.3% (many diffs)
10 mouse 70796 Zdhhc1 zinc finger, DHHC domain co... XM_006531357.3 76% 68.3% (many diffs)
11 mouse 70796 Zdhhc1 zinc finger, DHHC domain co... XM_011248500.2 76% 68.3% (many diffs)
12 mouse 70796 Zdhhc1 zinc finger, DHHC domain co... XM_011248501.2 76% 68.3% (many diffs)
13 mouse 70796 Zdhhc1 zinc finger, DHHC domain co... XM_017312960.1 75.6% 67.5% (many diffs)
14 mouse 70796 Zdhhc1 zinc finger, DHHC domain co... XM_011248502.1 75.5% 73.3% (many diffs)
15 mouse 70796 Zdhhc1 zinc finger, DHHC domain co... XM_006531358.3 75.2% 67.7% (many diffs)
16 mouse 70796 Zdhhc1 zinc finger, DHHC domain co... XM_017312961.1 74.8% 66.9% (many diffs)
17 mouse 70796 Zdhhc1 zinc finger, DHHC domain co... XM_006531360.3 61.7% 48.4% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1521
ORF length:
1455
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatgta caagatgaac atctgcaaca agccctccaa caagacggcc cctgagaaga
121gtgtgtggac ggcaccggca cagcccagcg gaccctcccc tgagctgcag ggccagcgat
181cccgccggaa tgggtggagc tggccccctc acccgctcca gattgtggcc tggctgctgt
241acctcttctt tgctgtgatc ggctttggga tccttgttcc cctcctgcct caccactggg
301tgcccgctgg ctacgcttgc atgggcgcca tctttgctgg ccaccttgtg gtgcacctga
361ccgccgtctc catcgatcca gcagatgcca acgtgcggga caagagctat gcggggcccc
421tgcccatctt caaccgaagc cagcacgcac atgtcattga agacctgcac tgcaacttgt
481gcaacgtgga tgtgagcgct cgctccaagc actgcagcgc ctgcaacaag tgcgtgtgcg
541gtttcgacca ccactgcaag tggctcaaca actgtgtggg cgagcggaac taccggctct
601ttctacacag tgttgcatcc gctttactgg gcgtcctgct cctggtgctg gtggccacat
661atgtcttcgt ggagttcttt gtcaacccca tgcgtctgcg caccaaccga cactttgaag
721tcctgaagaa tcacacggat gtgtggttcg tgttcctgcc tgccgccccc gtggagaccc
781aggcccctgc catcctggcc ctggccgccc tgctcatcct tctgggcctc ctgtccacag
841ccctcctggg gcacctgctc tgcttccaca tttatctcat gtggcacaag ctcaccacct
901atgagtacat cgtgcagcac cgcccaccac aggaggccaa gggggttcac agggagctcg
961agtcatgtcc tcccaagatg cggcccattc aggagatgga gttctacatg cggaccttca
1021gacatatgcg cccagagccc cctggccagg ccgggccagc agcagtgaat gccaaacact
1081ctcgccctgc ctccccggat ccgaccccag gtaggaggga ctgtgctggg cctccggtcc
1141aggtggagtg ggatagaaag aagcctctac cctggcgctc gcctctgctt cttttggcga
1201tgtggggccc tcaggctccc ccgtgtctct gcagaaaaag aggaagaggc gcgtgtataa
1261agtgcgaacg tctgagacct cggatccggc gtcggggcct agggccccca gccgccgctc
1321cagctcgtcg acggattccg cggacgccag ccctgtgcac gccgctggcc ctgccggcgc
1381ctaccactcg gcgtcggcag agtccgtgga cgagattcca gtggcgcaga cgcgcctggg
1441cagcgccgct ctggccgccc cgcggggccg gggccgacag cccacgctgg cgcggcaggc
1501gcgtgcgccc gccgttttcg tgcccaactt tcttgtacaa agtggttggt aagcctatcc
1561ctaaccctct cctcggtctc gattctacgt agtaatgagc tagcgctaac cggtggcgcg
1621ttaagtcgac aatcaacctc tggatta

Download FASTA (ORF) (Full)