Construct: ORF ccsbBroad304_03309

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF004437.1_s304c1, BRDN0000409900
Derived from:
ccsbBroadEn_03309
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
RNF138 (51444)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_03309
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 51444 RNF138 ring finger protein 138 NM_001191324.1 100% 100%
2 human 51444 RNF138 ring finger protein 138 NM_016271.5 100% 100%
3 human 51444 RNF138 ring finger protein 138 XM_005258285.1 81.2% 81.2% 0_1ins138
4 human 51444 RNF138 ring finger protein 138 NM_198128.2 61.6% 61.6% 110_111ins282
5 human 51444 RNF138 ring finger protein 138 XM_005258286.2 61.6% 61.6% 110_111ins282
6 human 51444 RNF138 ring finger protein 138 XR_935225.2 20.8% 1_455del;1191_3519del
7 human 51444 RNF138 ring finger protein 138 XR_001753203.2 12.8% 1_455del;565_566ins282;909_3237del
8 human 379013 RNF138P1 ring finger protein 138 pse... NR_001575.1 12.1% (many diffs)
9 mouse 56515 Rnf138 ring finger protein 138 NM_207623.2 93.3% 93.8% (many diffs)
10 mouse 56515 Rnf138 ring finger protein 138 XM_011246975.2 93.3% 93.8% (many diffs)
11 mouse 56515 Rnf138 ring finger protein 138 XM_006526117.3 86.2% 86.9% (many diffs)
12 mouse 56515 Rnf138 ring finger protein 138 NM_019706.3 79% 79.1% (many diffs)
13 mouse 56515 Rnf138 ring finger protein 138 NM_001303011.1 71.9% 72.2% (many diffs)
14 mouse 56515 Rnf138 ring finger protein 138 XM_006526118.3 71.9% 72.2% (many diffs)
15 mouse 56515 Rnf138 ring finger protein 138 XM_006526119.3 50.2% 52.2% (many diffs)
16 mouse 56515 Rnf138 ring finger protein 138 NM_001303005.1 44.8% 44% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
801
ORF length:
735
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatggc cgaggacctc tctgcggcca cgtcctacac cgaagatgat ttctactgcc
121ccgtctgtca ggaggtgctc aaaacgcccg tgcggaccac ggcctgtcag cacgttttct
181gtagaaaatg tttcctgact gcaatgaggg aaagcggagc acattgtccc ctatgtcgtg
241gaaatgtgac tagaagagag agagcatgtc ctgaacgggc cttagacctt gaaaatataa
301tgaggaagtt ttctggtagc tgcagatgct gtgcaaaaca gattaaattc tatcgcatga
361gacatcatta caaatcttgt aagaagtatc aggatgaata tggtgtttct tctatcattc
421caaactttca gatctctcaa gattcagtag ggaacagcaa taggagtgaa acatccacat
481ctgataacac agaaacttac caagagaata caagttcttc tggtcatcct acttttaagt
541gtcccctgtg tcaagaatca aattttacca gacagcgttt actggatcac tgtaacagta
601atcacctatt tcagatagtt cctgtgacat gtcctatttg tgtgtctctt ccttggggag
661atcctagcca gattaccaga aatttcgtta gtcatctaaa tcagagacat caatttgatt
721atggagaatt tgtgaatctt cagctagatg aagaaaccca ataccaaact gctgttgaag
781aatcttttca agtaaacatc tgcccaactt tcttgtacaa agtggttggt aagcctatcc
841ctaaccctct cctcggtctc gattctacgt agtaatgagc tagcgctaac cggtggcgcg
901ttaagtcgac aatcaacctc tggatta

Download FASTA (ORF) (Full)