Construct: ORF ccsbBroad304_03343

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF013403.1_s304c1, BRDN0000461471
Derived from:
ccsbBroadEn_03343
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
ATP6V1H (51606)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_03343
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 51606 ATP6V1H ATPase H+ transporting V1 s... NM_015941.4 100% 100%
2 human 51606 ATP6V1H ATPase H+ transporting V1 s... NM_213620.2 100% 100%
3 human 51606 ATP6V1H ATPase H+ transporting V1 s... NM_213619.2 96.2% 96.2% 525_526ins54
4 human 51606 ATP6V1H ATPase H+ transporting V1 s... XM_006716455.3 96.2% 96.2% 525_526ins54
5 human 51606 ATP6V1H ATPase H+ transporting V1 s... XM_011517542.1 57.1% 57.1% 0_1ins621
6 mouse 108664 Atp6v1h ATPase, H+ transporting, ly... NM_133826.5 91% 98.5% (many diffs)
7 mouse 108664 Atp6v1h ATPase, H+ transporting, ly... XM_006495433.3 91% 98.5% (many diffs)
8 mouse 108664 Atp6v1h ATPase, H+ transporting, ly... NM_001310442.1 87.5% 95% (many diffs)
9 mouse 108664 Atp6v1h ATPase, H+ transporting, ly... XM_006495436.3 73.3% 79.5% (many diffs)
10 mouse 108664 Atp6v1h ATPase, H+ transporting, ly... XM_006495437.3 59.7% 61.3% (many diffs)
11 mouse 108664 Atp6v1h ATPase, H+ transporting, ly... XM_006495439.3 51.8% 57.1% (many diffs)
12 mouse 108664 Atp6v1h ATPase, H+ transporting, ly... XM_011238336.2 51.8% 57.1% (many diffs)
13 mouse 108664 Atp6v1h ATPase, H+ transporting, ly... XM_011238337.2 51.8% 57.1% (many diffs)
14 mouse 108664 Atp6v1h ATPase, H+ transporting, ly... XM_017321103.1 51.8% 57.1% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1515
ORF length:
1449
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatgac caaaatggat atccgaggtg ctgtggatgc tgctgtcccc accaatatta
121ttgctgccaa ggctgcagaa gttcgtgcaa acaaagtcaa ctggcaatcc tatcttcagg
181gacagatgat ttctgctgaa gattgtgagt ttattcagag gtttgaaatg aaacgaagcc
241ctgaagagaa gcaagagatg cttcaaactg aaggcagcca gtgtgctaaa acatttataa
301atctgatgac tcatatctgc aaagaacaga ccgttcagta tatactaact atggtggatg
361atatgctgca ggaaaatcat cagcgtgtta gcattttctt tgactatgca agatgtagca
421agaacactgc gtggccctac tttctgccaa tgttgaatcg ccaggatccc ttcactgttc
481atatggcagc aagaattatt gccaagttag cagcttgggg aaaagaactg atggaaggca
541gtgacttaaa ttactatttc aattggataa aaactcagct gagttcacag aaactgcgtg
601gtagcggtgt tgctgttgaa acaggaacag tctcttcaag tgatagttcg cagtatgtgc
661agtgcgtggc cgggtgtttg cagctgatgc tccgggtcaa tgagtaccgc tttgcttggg
721tggaagcaga tggggtaaat tgcataatgg gagtgttgag taacaagtgt ggctttcagc
781tccagtatca aatgattttt tcaatatggc tcctggcatt cagtcctcaa atgtgtgaac
841acctgcggcg ctataatatc attccagttc tgtctgatat ccttcaggag tctgtcaaag
901agaaagtaac aagaatcatt cttgcagcat ttcgtaactt tttagaaaaa tcaactgaaa
961gagaaactcg ccaagaatat gccctggcta tgattcagtg caaagttctg aaacagttgg
1021agaacttgga acagcagaag tacgatgatg aagatatcag cgaagatatc aaatttcttt
1081tggaaaaact tggagagagt gtccaggacc ttagttcatt tgatgaatac agttcagaac
1141ttaaatctgg aaggttggaa tggagtcctg tgcacaaatc tgagaaattt tggagagaga
1201atgctgtgag gttaaatgag aagaattatg aactcttgaa aatcttgaca aaacttttgg
1261aagtgtcaga tgatccccaa gtcttagctg ttgctgctca cgatgttgga gaatatgtgc
1321ggcattatcc acgaggcaaa cgggtcatcg agcagctcgg tgggaagcag ctggtcatga
1381accacatgca tcatgaagac cagcaggtcc gctataatgc tctgctggcc gtgcagaagc
1441tcatggtgca caactgggaa taccttggca agcagctcca gtccgagcag ccccagaccg
1501ctgccgcccg aagctaccca actttcttgt acaaagtggt tggtaagcct atccctaacc
1561ctctcctcgg tctcgattct acgtagtaat gagctagcgc taaccggtgg cgcgttaagt
1621cgacaatcaa cctctggatt a

Download FASTA (ORF) (Full)