Construct: ORF ccsbBroad304_03446

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF006551.1_s304c1, BRDN0000408267
Derived from:
ccsbBroadEn_03446
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
RRN3 (54700)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_03446
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 54700 RRN3 RRN3 homolog, RNA polymeras... NM_018427.4 100% 100%
2 human 54700 RRN3 RRN3 homolog, RNA polymeras... NM_001301064.1 95.3% 95.3% 252_253ins90
3 human 653390 RRN3P2 RRN3 homolog, RNA polymeras... NR_003369.2 59.5% (many diffs)
4 human 730092 RRN3P1 RRN3 homolog, RNA polymeras... NR_003370.2 57.9% (many diffs)
5 mouse 106298 Rrn3 RRN3 RNA polymerase I trans... NM_001039521.1 85.1% 86.6% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
2022
ORF length:
1953
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcaccat ggcggcaccg ctgcttcaca cgcgtttgcc gggagatgcg gccgcttcgt
121cctctgcagt taagaagctg ggcgcgtcga ggactgggat ttcaaatatg cgtgcattag
181agaatgactt tttcaattct cccccaagaa aaactgttcg gtttggtgga actgtgacag
241aagtcttgct gaagtacaaa aagggtgaaa caaatgactt tgagttgttg aagaaccagc
301tgttagatcc agacataaag gatgaccaga tcatcaactg gctgctagaa ttccgttctt
361ctatcatgta cttgacaaaa gactttgagc aacttatcag tattatatta agattgcctt
421ggttgaatag aagtcaaaca gtagtggaag agtatttggc ttttcttggt aatcttgtat
481cagcacagac tgttttcctc agaccgtgtc tcagcatgat tgcttcccat tttgtgcctc
541cccgagtgat cattaaggaa ggcgatgtag atgtttcaga ttctgatgat gaagatgata
601atcttcctgc aaattttgac acatgtcaca gagccttgca aataatagca agatatgtac
661catcgacacc gtggtttctc atgccaatac tggtggaaaa atttccattt gttcgaaaat
721cagagagaac actggaatgt tacgttcata acttactaag gattagtgta tattttccaa
781ccttgaggca tgaaattctg gagcttatta ttgaaaaact actcaagttg gatgtgaatg
841catcccggca gggtattgaa gatgctgaag aaacagcaac tcaaacttgt ggtgggacag
901attccacgga aggattgttt aatatggatg aagatgaaga aactgaacat gaaacaaagg
961ctggtcctga acggctcgac cagatggtgc atcctgtagc cgagcgcctg gacatcctga
1021tgtctttggt tttgtcctac atgaaggatg tctgctatgt agatggtaag gttgataacg
1081gcaaaacaaa ggatctatat cgcgacctga taaacatctt tgacaaactc ctgttgccca
1141cccatgcctc ctgccatgta cagtttttca tgttttacct ctgtagtttc aaattgggat
1201tcgcagaggc atttttggaa catctctgga aaaaattgca ggacccaagt aatcctgcca
1261tcatcaggca ggctgctgga aattatattg gaagcttttt ggcaagagct aaatttattc
1321ctcttattac tgtaaaatca tgcctagatc ttttggttaa ctggctgcac atatacctta
1381ataaccagga ttcgggaaca aaggcattct gcgatgttgc tctccatgga ccattttact
1441cagcctgcca agctgtgttc tacacctttg tttttagaca caagcagctt ttgagcggaa
1501acctgaaaga aggtttgcag tatcttcaga gtctgaattt tgagcggata gtgatgagcc
1561agctaaatcc cctgaagatt tgcctgccct cagtggttaa cttttttgct gcaatcacaa
1621ataagtacca gctcgtcttc tgctacacca tcattgagag gaacaatcgc cagatgctgc
1681cagtcattag gagtaccgct ggaggagact cagtgcagat ctgcacaaac ccgctggaca
1741ccttcttccc ctttgatccc tgtgtgctga agaggtcaaa gaaattcatt gatcctattt
1801atcaggtgtg ggaagacatg agtgctgaag agctacagga gttcaagaaa cccatgaaaa
1861aggacatagt ggaagatgaa gatgatgact ttctgaaagg cgaagtgccc cagaatgata
1921ccgtgattgg gatcacacca agctcctttg acacgcattt ccgaagtcct tcaagtagtg
1981tgggctcccc acccgtgttg tacatgcaac ccagtcccct cttgccaact ttcttgtaca
2041aagtggttgg taagcctatc cctaaccctc tcctcggtct cgattctacg tagtaatgag
2101ctagcgctaa ccggtggcgc gttaagtcga caatcaacct ctggatta

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