Transcript: Human NR_003369.2

Homo sapiens RRN3 homolog, RNA polymerase I transcription factor pseudogene 2 (RRN3P2), non-coding RNA.

Source:
NCBI, updated 2018-05-12
Taxon:
Homo sapiens (human)
Gene:
RRN3P2 (653390)
Length:
2412
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
NR_003369.2
NBCI Gene record:
RRN3P2 (653390)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NR_003369.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000017979 GCTGCACATATACCTTAATAA pLKO.1 1215 3UTR 100% 15.000 7.500 Y RRN3P1 n/a
2 TRCN0000240888 TTGCCAGGATCCATCTATAAA pLKO_005 1784 3UTR 100% 15.000 7.500 Y BANP n/a
3 TRCN0000240887 GCCCTGGAGGCTACTTGTAAA pLKO_005 1872 3UTR 100% 13.200 6.600 Y BANP n/a
4 TRCN0000240885 GGATAGCATTGAAGCCAAATT pLKO_005 1847 3UTR 100% 13.200 6.600 Y BANP n/a
5 TRCN0000179495 GAAGACGAACCTGCTTTGAAA pLKO.1 1743 3UTR 100% 5.625 2.813 Y BANP n/a
6 TRCN0000017980 GCTGTGTTCTACACCTTTGTT pLKO.1 1303 3UTR 100% 5.625 2.813 Y RRN3P1 n/a
7 TRCN0000180099 CAATCTGCTTGCGGTTGGATA pLKO.1 1831 3UTR 100% 4.950 2.475 Y BANP n/a
8 TRCN0000017982 CGGAAACCTGAAAGAAGGTTT pLKO.1 1347 3UTR 100% 0.495 0.248 Y RRN3P1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NR_003369.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_03446 pDONR223 100% 59.5% None (many diffs) n/a
2 ccsbBroad304_03446 pLX_304 0% 59.5% V5 (many diffs) n/a
3 TRCN0000468173 TCTGCCCTTGTCCTTGCTGCACCC pLX_317 22.4% 59.5% V5 (many diffs) n/a
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