Construct: ORF ccsbBroad304_03546

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF014029.1_s304c1, BRDN0000409224
Derived from:
ccsbBroadEn_03546
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
DNAJC17 (55192)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_03546
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 55192 DNAJC17 DnaJ heat shock protein fam... NM_018163.3 100% 100%
2 human 55192 DNAJC17 DnaJ heat shock protein fam... XM_017022401.2 91.5% 90.7% (many diffs)
3 human 55192 DNAJC17 DnaJ heat shock protein fam... XM_017022402.1 61.7% 58.7% (many diffs)
4 human 55192 DNAJC17 DnaJ heat shock protein fam... XR_002957657.1 60.7% 1_31del;630_692del;1007_1501del
5 human 55192 DNAJC17 DnaJ heat shock protein fam... XM_024449981.1 47.7% 43.7% (many diffs)
6 human 55192 DNAJC17 DnaJ heat shock protein fam... XR_002957656.1 37.4% (many diffs)
7 mouse 69408 Dnajc17 DnaJ heat shock protein fam... NM_139139.2 87.9% 88.8% (many diffs)
8 mouse 69408 Dnajc17 DnaJ heat shock protein fam... XR_374520.2 62.9% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
978
ORF length:
912
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatggc agtgaccaag gagctcttac agatggacct gtacgcgctg ctaggcattg
121aggagaaggc agcggacaaa gaggtaaaga aggcgtatag gcagaaggcc ctctcctgcc
181acccagacaa aaatccagat aatcccagag cagctgaact cttccaccag ctttctcagg
241ccttggaggt gctgaccgat gctgcagcca gggctgcata tgacaaggtc aggaaagcca
301agaAGCAAGC AGCAGAGAGG ACCCAGAAAC TTGATGAGAA AAGGAAGAAA GTGAAGCTTG
361ACCTGGAGGC CCGGGAGCGG CAGGCCCAGG CCCAGGAGAG TGAGGAGGAA GAGGAGAGCC
421GGAGCACCAG GACACTAGAG CAAGAGATCG AACGCCTGAG AGAAGAGGGT TCCCGGCAGC
481TGGAGGAACA GCAGAGGCTC ATCCGGGAGC AGATACGCCA GGAGCGTGAC CAGAGGTTGA
541GAGGAAAGGC AGAAAATACT GAAGGCCAAG GAACCCCCAA ACTAAAGCTA AAATGGAAGT
601GCAAGAAGGA GGATGAGTCA AAAGGTGGCT ACTCCAAAGA CGTCCTCCTA CGGCTTTTGC
661AGAAGTATGG TGAGGTTCTC AACCTGGTGC TTTCCAGTAA GAAGCCAGGC ACTGCTGTGG
721TGGAGTTTGC AACCGTCAAG GCAGCGGAGC TGGCTGTCCA GAATGAAGTT GGCCTGGTGG
781ATAACCCTCT GAAGATTTCC TGGTTGGAGG GACAGCCCCA GGATGCCGTG GGCCGCAGCC
841ACTCAGGACT GTCAAAGGGC TCAGTGCTGT CAGAGAGGGA CTACGAGAGC CTCGTCATGA
901TGCGCATGCG CCAGGCGGCC GAGCGGCAAC AGCTGATCGC ACGGATGCAG CAGGAAGACC
961AGGAGGGGCC GCCTACGTAC CCAACTTTCT TGTACaaagt ggttggtaag cctatcccta
1021accctctcct cggtctcgat tctacgtagt aatgagctag cgctaaccgg tggcgcgtta
1081agtcgacaat caacctctgg atta

Download FASTA (ORF) (Full)

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