Construct: ORF ccsbBroad304_03665

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF008700.1_s304c1, BRDN0000399054
Derived from:
ccsbBroadEn_03665
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
ITFG2 (55846)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_03665
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 55846 ITFG2 integrin alpha FG-GAP repea... NM_018463.4 100% 100%
2 human 55846 ITFG2 integrin alpha FG-GAP repea... XM_005253707.5 95% 91.8% (many diffs)
3 human 55846 ITFG2 integrin alpha FG-GAP repea... XM_024449057.1 73.7% 69.4% (many diffs)
4 human 55846 ITFG2 integrin alpha FG-GAP repea... XR_001748811.2 72.9% 1_98del;1440_1839del
5 human 55846 ITFG2 integrin alpha FG-GAP repea... XR_002957358.1 61% 1_98del;1440_2195del
6 human 55846 ITFG2 integrin alpha FG-GAP repea... XM_005253709.4 60.4% 60.4% 0_1ins531
7 human 55846 ITFG2 integrin alpha FG-GAP repea... XR_002957357.1 57% 1_98del;1440_2349del
8 human 55846 ITFG2 integrin alpha FG-GAP repea... NR_147202.2 56.4% 1_93del;476_477ins22;1413_2316del
9 human 55846 ITFG2 integrin alpha FG-GAP repea... XM_017019641.1 55.8% 53% (many diffs)
10 human 55846 ITFG2 integrin alpha FG-GAP repea... XR_001748810.2 54.6% 1_98del;1440_2456del
11 human 55846 ITFG2 integrin alpha FG-GAP repea... NR_130744.3 50.1% 1_93del;499_574del;1511_2674del
12 human 55846 ITFG2 integrin alpha FG-GAP repea... XR_002957356.1 47.6% 1_98del;1440_2815del
13 human 55846 ITFG2 integrin alpha FG-GAP repea... XR_002957355.1 46.7% 1_98del;1440_2867del
14 human 55846 ITFG2 integrin alpha FG-GAP repea... XR_002957354.1 45.3% 1_98del;1440_2960del
15 human 55846 ITFG2 integrin alpha FG-GAP repea... XR_002957352.1 43% 1_98del;1440_3114del
16 human 55846 ITFG2 integrin alpha FG-GAP repea... XR_001748812.1 40.8% (many diffs)
17 human 55846 ITFG2 integrin alpha FG-GAP repea... XR_002957351.1 38.4% 1_98del;1440_3484del
18 human 55846 ITFG2 integrin alpha FG-GAP repea... XR_002957359.1 37.7% 1_98del;1318_1387del;1510_3554del
19 human 55846 ITFG2 integrin alpha FG-GAP repea... XR_002957360.1 37.4% 1_117del;523_598del;1535_3579del
20 human 55846 ITFG2 integrin alpha FG-GAP repea... XR_002957353.1 37.3% 1_98del;1440_3591del
21 mouse 101142 Itfg2 integrin alpha FG-GAP repea... NM_133927.1 86.5% 89.4% (many diffs)
22 mouse 101142 Itfg2 integrin alpha FG-GAP repea... XM_006505229.3 52.1% 52.5% (many diffs)
23 mouse 101142 Itfg2 integrin alpha FG-GAP repea... XM_006505230.2 52.1% 52.5% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1407
ORF length:
1341
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatgag gtcagttagc tacgtgcagc gcgtggcgct ggagttcagc gggagcctct
121tcccgcacgc aatctgcctc ggagacgttg ataacgatac gttaaatgaa ctggtggtgg
181gagacaccag cgggaaggtg tctgtgtata aaaatgatga cagtcggcca tggctcacct
241gttcctgcca gggaatgctg acttgcgttg gggttggaga cgtgtgtaat aaaggaaaga
301acctgttggt ggcagtgagt gctgaaggct ggtttcattt gtttgacctg acacctgcca
361aggtgttgga tgcttctggg caccacgaga cactaatcgg agaggagcag cgtccagtct
421tcaagcagca catccctgcc aacaccaagg tcatgctgat cagcgacatc gatggagatg
481ggtgtcgtga gctggtggtg ggctacacag accgtgtggt gcgagctttc cgctgggagg
541agctaggtga gggtcctgaa catctgacag ggcagctggt gtccctcaag aaatggatgc
601tggagggtca ggtggacagc ctctcagtga ctctggggcc actgggtctt cctgaactga
661tggtgtctca gccaggttgt gcgtatgcaa ttctactgtg tacctggaaa aaggacactg
721ggtcccctcc tgcctctgaa gggcccacgg atggtagtag ggagacccca gctgcccgag
781acgtggtgct gcaccagaca tctggccgta tccacaacaa gaatgtctcc actcacctaa
841ttggcaacat caaacaaggc cacggcactg agagtagtgg ctctggcctc tttgccctgt
901gcaccctgga tgggacactg aagctcatgg aagaaatgga agaagcagac aagctgctgt
961ggtcagtgca ggtggatcac cagctctttg ccctggagaa actggatgtc accggcaacg
1021ggcatgagga ggtagttgca tgcgcctggg atggacagac atatatcatt gatcacaacc
1081gcaccgtcgt ccgcttccaa gtggatgaaa atatccgtgc cttctgtgca ggcctgtacg
1141cctgcaaaga gggccgcaac agcccctgcc tcgtatatgt cactttcaac cagaagatct
1201atgtgtactg ggaggtgcag ctggagcgga tggagtctac caatctggtg aaactgctgg
1261agaccaagcc ggagtaccac agcctgctgc aggagctggg cgtggatcct gacgacctcc
1321ctgtgactcg tgccctgctt caccaaacgc tctaccatcc agaccagcca ccacagtgtg
1381ctccctcaag cctccaggat cccacctacc caactttctt gtacaaagtg gttggtaagc
1441ctatccctaa ccctctcctc ggtctcgatt ctacgtagta atgagctagc gctaaccggt
1501ggcgcgttaa gtcgacaatc aacctctgga tta

Download FASTA (ORF) (Full)

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