Construct: ORF ccsbBroad304_03690

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF015337.1_s304c1, BRDN0000402898
Derived from:
ccsbBroadEn_03690
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
BCAP29 (55973)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_03690
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 55973 BCAP29 B cell receptor associated ... NM_001371353.1 100% 100%
2 human 55973 BCAP29 B cell receptor associated ... NM_001371354.1 100% 100%
3 human 55973 BCAP29 B cell receptor associated ... NM_018844.4 100% 100%
4 human 55973 BCAP29 B cell receptor associated ... NM_001371357.1 96.3% 96.2% (many diffs)
5 human 55973 BCAP29 B cell receptor associated ... NM_001363483.2 84.8% 84.8% 690_818del
6 human 55973 BCAP29 B cell receptor associated ... NM_001371356.1 78.8% 68.9% (many diffs)
7 human 55973 BCAP29 B cell receptor associated ... NM_001363482.1 69.6% 69.1% (many diffs)
8 human 55973 BCAP29 B cell receptor associated ... NM_001371355.1 69.6% 69.1% (many diffs)
9 human 55973 BCAP29 B cell receptor associated ... NM_001008405.4 69.2% 66.6% 689_767del;803_1044del
10 human 115253422 DUS4L-BCAP29 DUS4L-BCAP29 readthrough NM_001371365.2 50.1% 50.1% 1_720del
11 human 115253422 DUS4L-BCAP29 DUS4L-BCAP29 readthrough NM_001371366.2 50.1% 50.1% 1_720del
12 human 115253422 DUS4L-BCAP29 DUS4L-BCAP29 readthrough NM_001371367.2 50.1% 50.1% 1_720del
13 human 115253422 DUS4L-BCAP29 DUS4L-BCAP29 readthrough NM_001371364.2 40.9% 39.4% 1_720del;1409_1487del;1523_1764del
14 human 55973 BCAP29 B cell receptor associated ... NR_163926.1 27% (many diffs)
15 human 55973 BCAP29 B cell receptor associated ... NR_163929.1 24.6% 1_70del;660_683del;818_2935del
16 human 55973 BCAP29 B cell receptor associated ... NR_163934.1 23.8% 1_70del;550_668del;913_3030del
17 human 55973 BCAP29 B cell receptor associated ... NR_027830.2 23.2% (many diffs)
18 human 55973 BCAP29 B cell receptor associated ... NR_163927.1 22.7% (many diffs)
19 human 55973 BCAP29 B cell receptor associated ... NR_163928.1 22.3% (many diffs)
20 human 55973 BCAP29 B cell receptor associated ... NR_163937.1 22.2% (many diffs)
21 human 55973 BCAP29 B cell receptor associated ... NR_163933.1 22.1% (many diffs)
22 human 55973 BCAP29 B cell receptor associated ... NR_163936.1 21% 1_70del;549_550ins109;685_2802del
23 human 55973 BCAP29 B cell receptor associated ... NR_163935.1 20.7% 1_70del;415_983del;1363_3480del
24 human 55973 BCAP29 B cell receptor associated ... NR_163931.1 20.1% 1_70del;414_415ins136;658_2775del
25 human 55973 BCAP29 B cell receptor associated ... NR_163938.1 19.6% 1_70del;263_264ins151;643_2760del
26 human 55973 BCAP29 B cell receptor associated ... NR_163932.1 18.4% (many diffs)
27 human 55973 BCAP29 B cell receptor associated ... NR_163930.1 16.7% (many diffs)
28 human 115253422 DUS4L-BCAP29 DUS4L-BCAP29 readthrough NR_163941.2 10.9% 1_951del;1675_6631del
29 human 115253422 DUS4L-BCAP29 DUS4L-BCAP29 readthrough NR_163940.2 10.7% 1_989del;1678_1756del;1792_6748del
30 human 115253422 DUS4L-BCAP29 DUS4L-BCAP29 readthrough NR_163939.2 10.6% 1_1131del;1855_6811del
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
789
ORF length:
723
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatgac actccaatgg gctgcagtgg caacctttct ttatgccgaa ataggactca
121ttttaatctt ctgcctacct tttattcctc ctcagagatg gcagaagatt ttttcattta
181atgtctgggg taaaattgca actttttgga acaaggcttt ccttaccatt atcatcctat
241tgattgttct atttctagat gctgtgagag aagtaaggaa atattcctca gttcatacca
301ttgagaagag ctccaccagc agacctgatg cctatgaaca cacacagatg aaacttttta
361ggtctcaaag aaatctttac atttctggat tttccctatt tttttggcta gttttgagac
421gtctggttac gcttattact caactggcaa aagaactgtc aaacaaaggt gtacttaaaa
481ctcaagcaga aaatactaac aaggctgcca aaaaatttat ggaagaaaac gaaaaactaa
541aaaggatttt gaaaagccat ggtaaagatg aagaatgtgt tttggaagca gaaaataaaa
601aactagtaga agaccaggag aaactgaaaa ctgaattaag gaagacttca gatgcccttt
661ctaaggcaca aaatgatgtg atggaaatga agatgcagtc agagagactt tcgaaagaat
721atgatcaact cctgaaagaa cactctgaac ttcaggatcg tttagaaaga ggcaacaaga
781aaagactgtg cccaactttc ttgtacaaag tggttggtaa gcctatccct aaccctctcc
841tcggtctcga ttctacgtag taatgagcta gcgctaaccg gtggcgcgtt aagtcgacaa
901tcaacctctg gatta

Download FASTA (ORF) (Full)