Transcript: Human NM_001371356.1

Homo sapiens B cell receptor associated protein 29 (BCAP29), transcript variant 9, mRNA.

Source:
NCBI, updated 2019-07-12
Taxon:
Homo sapiens (human)
Gene:
BCAP29 (55973)
Length:
2810
CDS:
71..937

Additional Resources:

NCBI RefSeq record:
NM_001371356.1
NBCI Gene record:
BCAP29 (55973)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001371356.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000364978 ACTATGACCGGTTCGTAATTT pLKO_005 783 CDS 100% 15.000 7.500 Y BCAP29 n/a
2 TRCN0000365011 GACGTCTGGTTACGCTTATTA pLKO_005 423 CDS 100% 15.000 7.500 Y BCAP29 n/a
3 TRCN0000369968 ATGCCACACATAGGTTGTATT pLKO_005 809 CDS 100% 13.200 6.600 Y BCAP29 n/a
4 TRCN0000364977 ATGCCGAAATAGGACTCATTT pLKO_005 108 CDS 100% 13.200 6.600 Y BCAP29 n/a
5 TRCN0000376604 CAAGGCTTTCCTTACCATTAT pLKO_005 217 CDS 100% 13.200 6.600 Y BCAP29 n/a
6 TRCN0000369966 GTCAAACAAAGGTGTACTTAA pLKO_005 463 CDS 100% 13.200 6.600 Y BCAP29 n/a
7 TRCN0000369967 TAGGTCTCAAAGAAATCTTTA pLKO_005 364 CDS 100% 13.200 6.600 Y BCAP29 n/a
8 TRCN0000060447 CCTTACCATTATCATCCTATT pLKO.1 226 CDS 100% 10.800 5.400 Y BCAP29 n/a
9 TRCN0000060444 GCTGTGAGAGAAGTAAGGAAA pLKO.1 266 CDS 100% 4.950 2.475 Y BCAP29 n/a
10 TRCN0000060443 CGCTTATTACTCAACTGGCAA pLKO.1 435 CDS 100% 2.640 1.320 Y BCAP29 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001371356.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_03690 pDONR223 100% 78.8% 68.9% None (many diffs) n/a
2 ccsbBroad304_03690 pLX_304 0% 78.8% 68.9% V5 (many diffs) n/a
3 TRCN0000470082 CCGCTTAGATTACGTTGGCCCAAG pLX_317 63.7% 78.8% 68.9% V5 (many diffs) n/a
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