Construct: ORF ccsbBroad304_03829

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF010003.1_s304c1, BRDN0000408796
Derived from:
ccsbBroadEn_03829
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
NUFIP2 (57532)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_03829
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 57532 NUFIP2 nuclear FMR1 interacting pr... NM_020772.3 100% 100%
2 human 57532 NUFIP2 nuclear FMR1 interacting pr... XM_017024896.2 77.1% 77.1% 0_1ins477
3 mouse 68564 Nufip2 nuclear fragile X mental re... NM_001024205.2 93.6% 93.9% (many diffs)
4 mouse 68564 Nufip2 nuclear fragile X mental re... XM_006534062.3 93.6% 93.9% (many diffs)
5 mouse 68564 Nufip2 nuclear fragile X mental re... XM_006534063.3 71.6% 72% (many diffs)
6 mouse 68564 Nufip2 nuclear fragile X mental re... XM_017314730.1 71.6% 72% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
2154
ORF length:
2085
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcaccat ggaggagaag cccggccagc cacagcctca gcaccatcac agccaccacc
121atccgcacca tcaccctcag cagcagcagc agcagccgca ccaccaccac cattattatt
181tctacaacca cagccacaac caccaccacc accatcatca ccagcagcct caccaatacc
241tgcagcatgg agccgagggc agccccaagg cccagccaaa gccgctgaaa catgagcaga
301aacacaccct ccagcagcac caggaaacgc cgaagaagaa aacaggctat ggtgaactaa
361acggtaatgc tggagaaaga gaaatatctt taaagaacct gagttctgat gaagccacca
421accctatttc cagggtcctc aatggcaacc agcaagttgt agacactagc ctgaagcaga
481ctgtaaaggc caacaccttt gggaaagcag gaattaaaac caagaatttc attcagaaaa
541acagtatgga caaaaagaat gggaagtctt atgaaaataa atctggagag aatcagtctg
601tagataagtc tgatactata ccaattccaa atggtgtggt aacaaataat tctggttata
661ttactaatgg ttatatgggt aaaggagcag ataatgatgg tagtggatct gagagcggat
721atacaactcc taaaaaaagg aaagctaggc gcaatagtgc caagggttgt gaaaacctta
781atatagtgca ggacaaaata atgcaacaag agaccagtgt cccaacctta aaacagggac
841ttgaaacttt caagcctgac tatagtgaac aaaagggaaa tcgagtagat ggttcgaagc
901ccatttggaa gtatgaaact gggcctggag gaacaagtcg aggaaaacct gctgtgggtg
961atatgcttcg gaaaagctca gatagtaaac ctggtgtgag cagcaaaaag tttgatgatc
1021ggcccaaagg aaagcatgct tcagctgttg cctccaaaga ggactcgtgg accctattta
1081aaccaccccc agtttttcca gtggacaata gcagtgctaa aatagttcct aaaataagtt
1141atgcaagcaa agttaaggaa aacctcaaca aaactataca gaactcttct gtgtcaccaa
1201cttcatcttc atcatcttca tcatctaccg gggaaactca gacccaatca tcaagtcgct
1261tatcccaggt ccctatgtca gcgctgaaat ctgttacttc tgccaacttt tctaatgggc
1321ctgttttagc agggactgat ggaaatgttt atcctccagg gggtcagcca ctgctaacta
1381ctgctgctaa tactctaaca cccatctctt ctgggacaga ttcagttctc caggacatga
1441gtctaacttc agcagctgtt gaacaaatta agactagcct ttttatctat ccttcaaata
1501tgcaaactat gctgttgagc acagcacaag tggatctgcc ctctcagaca gatcagcaaa
1561acctggggga tatcttccag aatcagtggg gtttatcatt tataaatgag cccagtgctg
1621gccctgagac tgttactggg aagtcatcag agcataaagt gatggaggtg acatttcaag
1681gagaatatcc tgctactttg gtttcacagg gtgctgaaat aattccctca ggaactgagc
1741atcctgtgtt tcccaaggct tacgagctgg agaaacggac tagtcctcaa gttctgggta
1801gcattctaaa atctgggact actagtgaga gtggagcctt atccttggaa cccagtcata
1861taggtgacct gcagaaagca gacaccagta gtcaaggtgc tttagtgttt ctctcaaagg
1921actacgagat agaaagtcaa aatcctctgg cctctcctac gaacactttg ttaggctctg
1981ccaaagaaca gagataccag agaggcctag aaaggaatga tagctggggt tcttttgacc
2041tgagggctgc tattgtatat cacactaaag aaatggaatc tatttggaat ttgcagaagc
2101aagatcccaa aaggataatc acttacaatg aagccatgga tagtccagat caattgccaa
2161ctttcttgta caaagtggtt ggtaagccta tccctaaccc tctcctcggt ctcgattcta
2221cgtagtaatg agctagcgct aaccggtggc gcgttaagtc gacaatcaac ctctggatta

Download FASTA (ORF) (Full)

GPP Web Portal Terms of Service

Effective Date: December 8, 2025
By using this site, you agree to our terms and conditions below.

Overview of Terms

The data made available on this website were generated for research purposes and are not intended for clinical or commercial uses. Commercial use (or other use for profit-making purposes) of the GPP Web Portal and its tools, is not permitted under these terms and may require a separate license agreement from Broad or its contributors. For more information, please contact partnering@broadinstitute.org.

The original data may be subject to rights claimed by third parties, including but not limited to, patent, copyright, other intellectual property rights, biodiversity-related access and benefit-sharing rights. It is the responsibility of users of Broad Institute services to ensure that their use of the data does not infringe any of the rights of such third parties.

Any questions or comments concerning these Terms of Use can be addressed to: legal@broadinstitute.org.

By accessing and viewing this GPP Web Portal, you agree to the following terms and conditions:

Attribution

You agree to acknowledge the Broad Institute (e.g., in publications, services or products) for any of your use of its online services, databases or software in accordance with good scientific practice. You agree to use the acknowledgment wording provided for the relevant tools as indicated on the FAQ for each tool.

Updating the Terms of Use

We reserve the right to update these Terms of Use at any time. When alterations are inevitable, we will attempt to give reasonable notice of any changes by placing a notice on our website, but you may wish to check each time you use the website. The date of the most recent revision will appear on this, the "GPP Web Portal Terms of Use" page. If you do not agree to these changes, please do not continue to use our online services. We will also make available an archived copy of the previous Terms of Use for comparison.

Indemnification and Disclaimer of Warranties

You are using this GPP Web Portal at your own risk, and you hereby agree to hold Broad and its contributors and their trustees, directors, officers, employees, and affiliated investigators harmless for any third party claims which may arise from your use of the GPP Web Portal, the tools available therein, or any portion thereof. Further, you agree to indemnify Broad, its contributors, and its and their trustees, directors, officers, employees, affiliated investigators, students, and affiliates for any loss, costs, claims, damages, or other liabilities arising from any unpermitted commercial or profit-making use you make of the GPP Web Portal. The GPP Web Portal is a research tool and is provided "as is". Broad does not represent that the GPP Web Portal is free of errors or bugs or suitable for any particular tasks.

ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, NONINFRINGEMENT, OR THE ABSENCE OF LATENT OR OTHER DEFECTS ARE DISCLAIMED. IN NO EVENT SHALL BROAD OR ITS CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THE GPP WEB PORTAL, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

Governing Law

The terms and conditions herein shall be construed, governed, interpreted, and applied in accordance with the internal laws of the Commonwealth of Massachusetts, U.S.A. Furthermore, by accessing, downloading, or using the Database, You consent to the personal jurisdiction of, and venue in, the state and federal courts within Massachusetts with respect to Your download or use of the Database.