Construct: ORF ccsbBroad304_03835

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF002544.1_s304c1, BRDN0000461642
Derived from:
ccsbBroadEn_03835
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
SLAIN2 (57606)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_03835
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 57606 SLAIN2 SLAIN motif family member 2 NM_020846.2 100% 100%
2 human 57606 SLAIN2 SLAIN motif family member 2 XM_005248121.3 95.7% 95.5% 1361_1438del
3 mouse 75991 Slain2 SLAIN motif family, member 2 NM_001113423.2 90.8% 93.9% (many diffs)
4 mouse 75991 Slain2 SLAIN motif family, member 2 NM_153567.3 87% 89.8% (many diffs)
5 mouse 75991 Slain2 SLAIN motif family, member 2 XM_006504171.1 66.2% 68.2% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
1812
ORF length:
1743
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcaccat ggaggacgtt aactccaacg tgaacgcgga ccaggaggtg cggaagctgc
121aggagctggt gaagaagctg gagaagcaga acgaacagct gaggagccgc tcgggggccg
181tgcagggcgc cggctccctt gggcccggca gcccggttcg ggccggcgcg tccattccct
241cctccggcgc ggcgtctcct cggggcttcc ccttgggcct cagcgccaag tcgggcggcg
301ggcccgggtc gggcccgagg cggacgagta gcgaagagct gcgggacgcc acctccttgc
361tagcggcggg cgagggcggc ttgctggacg aggtggagcc gctgcggccc gacgagctgg
421agcgcctgtc aggctgggag gaggaggagg agagctggct gtattcatca ccaaagaaaa
481aacttacacc aatgcagaaa tcggttagtc cattagtttg gtgcaggcaa gttttggatt
541acccaagtcc tgatgttgag tgtgctaaaa aatctcttat ccacaaactt gatcaaacta
601tgtcagctct caagaggcag aatttatata ataatccttt caactctatg agttacacca
661gtccttacag tccaaatgcc agtagcccat acagcagtgg cttcaattct ccatcctcaa
721ccccagtgcg acctcctata gtcaaacagc ttatacttcc tggaaattca ggtaacttga
781aaagctcaga cagaaatcct ccactcagtc ctcagtcctc tatagatagt gagttaagtg
841cttcagaatt agatgaagat tcaattggat ccaattataa gctaaatgat gtaactgatg
901tacagattct agcccggatg caggaagaaa gtctccggca agaatatgca gccaccacgt
961ctcggcgcag ttctggttca tcttgcaatt ctacaagacg gggtactttt agtgatcagg
1021aacttgatgc acaaagttta gatgatgaag atgacaatat gcatcatgca gtataccctg
1081ctgttaacag gttttcacca tcaccacgca attcacctcg accgtcacct aagcagtcac
1141ccagaaattc acctcgttca cgatctcctg ctcggggaat agaatatagt agagtgtccc
1201cacagcctat gattagccgc ttacagcaac ctcgcctttc acttcaaggc catcccacag
1261atttacagac aagcaatgtt aaaaatgaag aaaaactaag acgcagtctt ccaaacctgt
1321cccgaacatc taatacacaa gttgactcag tgaaaagcag cagaagtgac tcaaattttc
1381aagtgccaaa cggaggaata cctcgtatgc aacctcaggc ttcagccata ccttctccag
1441gcaaattccg ttcccctgca gcaccatctc ctttggctct tcggcaacca gtgaaagcat
1501ttagtaacca tggctctggt tctcctggta gccaagaaat aacacagctc acacaaacca
1561cctcctcacc tgggcctcct atggttcaga gcacagtctc agcaaatcct cccagcaata
1621tcaacagcgc tactctaacc agacctgcag ggacaactgc aatgagaagt ggcttgccca
1681gacccagtgc cccttctgct gggggcatac cagtgcctcg cagcaaactt gcacagcctg
1741ttcgcagatc cttgccagct cctaaaacct atggtagcat gaaagatgac agttggaaag
1801atggctgtta cttgccaact ttcttgtaca aagtggttgg taagcctatc cctaaccctc
1861tcctcggtct cgattctacg tagtaatgag ctagcgctaa ccggtggcgc gttaagtcga
1921caatcaacct ctggatta

Download FASTA (ORF) (Full)

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