Construct: ORF ccsbBroad304_03889

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF009106.1_s304c1, BRDN0000411075
Derived from:
ccsbBroadEn_03889
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
APOBEC3G (60489)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_03889
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 60489 APOBEC3G apolipoprotein B mRNA editi... NM_021822.4 100% 100%
2 human 60489 APOBEC3G apolipoprotein B mRNA editi... NM_001349436.1 97.1% 97.1% 0_1ins33
3 human 60489 APOBEC3G apolipoprotein B mRNA editi... NM_001349437.1 82.5% 82.5% 0_1ins201
4 human 60489 APOBEC3G apolipoprotein B mRNA editi... XM_017028903.1 72.6% 72.5% (many diffs)
5 human 60489 APOBEC3G apolipoprotein B mRNA editi... XM_017028904.1 59.8% 59.7% (many diffs)
6 human 60489 APOBEC3G apolipoprotein B mRNA editi... NM_001349438.2 50.4% 50.5% 582_582delGins571
7 human 200316 APOBEC3F apolipoprotein B mRNA editi... NM_001006666.2 23.1% 16.6% (many diffs)
8 human 200316 APOBEC3F apolipoprotein B mRNA editi... XM_017028643.2 23.1% 16.6% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1218
ORF length:
1152
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatgaa gcctcacttc agaaacacag tggagcgaat gtatcgagac acattctcct
121acaactttta taatagaccc atcctttctc gtcggaatac cgtctggctg tgctacgaag
181tgaaaacaaa gggtccctca aggccccctt tggacgcaaa gatctttcga ggccaggtgt
241attccgaact taagtaccac ccagagatga gattcttcca ctggttcagc aagtggagga
301agctgcatcg tgaccaggag tatgaggtca cctggtacat atcctggagc ccctgcacaa
361agtgtacaag ggatatggcc acgttcctgg ccgaggaccc gaaggttacc ctgaccatct
421ttgttgcccg cctctactac ttctgggacc cagattacca ggaggcgctt cgcagcctgt
481gtcagaaaag agacggtccg cgtgccacca tgaagatcat gaattatgac gaatttcagc
541actgttggag caagttcgtg tacagccaaa gagagctatt tgagccttgg aataatctgc
601ctaaatatta tatattactg cacatcatgc tgggggagat tctcagacac tcgatggatc
661cacccacatt cactttcaac tttaacaatg aaccttgggt cagaggacgg catgagactt
721acctgtgtta tgaggtggag cgcatgcaca atgacacctg ggtcctgctg aaccagcgca
781ggggctttct atgcaaccag gctccacata aacacggttt ccttgaaggc cgccatgcag
841agctgtgctt cctggacgtg attccctttt ggaagctgga cctggaccag gactacaggg
901ttacctgctt cacctcctgg agcccctgct tcagctgtgc ccaggaaatg gctaaattca
961tttcaaaaaa caaacacgtg agcctgtgca tcttcactgc ccgcatctat gatgatcaag
1021gaagatgtca ggaggggctg cgcaccctgg ccgaggctgg ggccaaaatt tcaataatga
1081catacagtga atttaagcac tgctgggaca cctttgtgga ccaccaggga tgtcccttcc
1141agccctggga tggactagat gagcacagcc aagacctgag tgggaggctg cgggccattc
1201tccagaatca ggaaaactgc ccaactttct tgtacaaagt ggttggtaag cctatcccta
1261accctctcct cggtctcgat tctacgtagt aatgagctag cgctaaccgg tggcgcgtta
1321agtcgacaat caacctctgg atta

Download FASTA (ORF) (Full)